Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 601 a.a., ABC-type oligopeptide transport system, periplasmic component from Enterobacter asburiae PDN3

 Score =  646 bits (1666), Expect = 0.0
 Identities = 322/594 (54%), Positives = 403/594 (67%), Gaps = 3/594 (0%)

Query: 19  LALSSQFSWA-AVIETTRLVGFGEAKYPENFTHFDYVNPQAPKYGKVTFGELGTYDNFNR 77
           LAL+S  S A A+ E       GE KY  NFTHFDYVNP APK GKVT    GT+DNFNR
Sbjct: 10  LALTSLSSQAQAIKENIAFAVIGEPKYAVNFTHFDYVNPAAPKGGKVTLSATGTFDNFNR 69

Query: 78  FASRGVAAANTAELYDPLMFSPADEIDSYYPLIASKIRYSDDFTWLEIDLNPNARFHDGK 137
           FA RGVAAA T  LYD L  +  DE  SYYPLIA  +RY+D+F W EI LNP ARFHDG 
Sbjct: 70  FALRGVAAARTESLYDTLFVTSDDEPGSYYPLIAENVRYADNFAWAEISLNPRARFHDGT 129

Query: 138 PITAQDVEFSFEKFMAEGVPQYRVYYQDVKSVKAIAERTVRIEMKQPNREQLFSLAQSTR 197
           P+ A DV F+F KFM EGVPQ+R+ Y+   SV+AIA  TVRIE+ +PN+E + SL  S  
Sbjct: 130 PVKASDVAFTFHKFMTEGVPQFRIVYKGA-SVRAIAPLTVRIELSEPNKENMLSLF-SLP 187

Query: 198 VLPKHYWQYKNLAEPLNEPPVGSGAYQIVDFKPGQSVTYKLNPDYWAKDLPVNVGRNNFA 257
           V+P+ +W+   L++PL+ PP+  G Y+I D++ GQ V Y    DYWA DLPVN GR NF 
Sbjct: 188 VMPESFWKNHKLSDPLSTPPLAGGPYRITDWRMGQYVVYSRVKDYWAADLPVNRGRWNFD 247

Query: 258 QIQYDYYRDDTVMLEAFKAGEFDLREENQAKFWATSYTGRNFDQGLIKKEEIAHQAPAST 317
            ++YDYY DD V  EAFKAG FDLR E+ AK WAT Y G+NF +G I K+E  +++   T
Sbjct: 248 TLRYDYYLDDNVAFEAFKAGAFDLRVESSAKNWATRYIGKNFAKGYIVKDEHKNESAQDT 307

Query: 318 QGFIFNTQRPVFQDVRVREALNYALDFEWMNKNLFYDQYQRTRSYFQNTEYEAQGLPNAA 377
           +   FN QRPVF D RVREA++ A DFEWMNK LFY  Y R  SYFQNTEY A+  P A 
Sbjct: 308 RWLAFNIQRPVFNDRRVREAISLAFDFEWMNKALFYGAYSRANSYFQNTEYAARDYPKAD 367

Query: 378 ELAVLTPYKEQLPARVFTETYQPSVTDGSGRIRTQMREAFALLKEAGWELKNKVMTNVKT 437
           ELA+L P K ++P +VFT  +QP  ++G G  R  + +A  LL +AGW LKN+   + KT
Sbjct: 368 ELALLAPLKAEVPPQVFTTVFQPPASNGDGYDRVNLLKASKLLDDAGWHLKNQKRVDAKT 427

Query: 438 GEPLSFELLIYSPTTERIAIPLQKNLQLMGIEMKIRTVDTTQYTKRLRDRDFDMISHGFS 497
           G+PLSFELL+ S   ++  +P + NL+ +G+ M IR VD  Q T R+R RD+DM+   + 
Sbjct: 428 GKPLSFELLLSSGGNDQWVLPFKHNLERLGVTMNIRQVDNAQITSRMRSRDYDMMQRLWP 487

Query: 498 ANPYPSPNLLIVWNSNYMDSSYNSAGANHPVIDALTEQIAKSQQDTEKLRALGSALDRVL 557
           A P+PS +L I W S+Y+DSSYN+ G   P IDAL  +I  +Q D EKL  LG ALDRVL
Sbjct: 488 AQPWPSSDLQISWASSYIDSSYNAPGVKSPAIDALIAKIVAAQGDKEKLLPLGRALDRVL 547

Query: 558 QWNFYIIPQWHLSMYRVAMWDKFSRPSVLPKYSLGLDTWWIDQEKAARLPEKRR 611
            WN+Y++P W++   R+A WDKFS P+V P YSLG DTWW D  KAARLP +RR
Sbjct: 548 TWNYYMLPMWYMGEDRLARWDKFSVPAVRPVYSLGFDTWWYDVNKAARLPAERR 601