Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 531 a.a., ABC transporter, substrate binding protein (peptide) from Agrobacterium fabrum C58

 Score = 89.4 bits (220), Expect = 4e-22
 Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 12/243 (4%)

Query: 105 SYYPLIASKIRYSDDFTWLEIDLNPNARFHDGKPITAQDVEFSFEKFMAEGVPQYRVYYQ 164
           ++ P +A     S D       L P  ++HDG+P T+ DV FS    + E  P+ RV + 
Sbjct: 77  TFKPHLAESWDISADGKTYTFHLRPGIKWHDGQPFTSADVAFSLLT-LKETHPRRRVTFA 135

Query: 165 DVKSVKAIAERTVRIEMKQPNREQLFSLAQ-STRVLPKHYWQYKNL-AEPLNEPPVGSGA 222
            ++ +      TV  + K P    L +L+  ++ ++PKH ++  ++ A P N  P+G+G 
Sbjct: 136 SLEKIDTPDPLTVVAQFKTPVPFLLPALSGIASPIIPKHLYEETDIRANPYNAKPIGTGP 195

Query: 223 YQIVDFKPGQSVTYKLNPDYWAKDLPVNVGRNNFAQIQYDYYRDDTVMLEAFKAGEFDLR 282
           Y   +++ G  +  + NPDYW KDLP+         +   +  D +    AF+AG+ D+ 
Sbjct: 196 YVFKEWERGSHILLERNPDYWIKDLPL------LDAVVTRFIVDVSARGAAFEAGDVDVG 249

Query: 283 EENQAKFWATSYTGRNFDQGLIKKEEIAHQAPASTQGFIFNTQRPVFQDVRVREALNYAL 342
                        G   D      E   ++   S     F    P+  D+RVR+A  +A+
Sbjct: 250 YHTPVPLDEIKRLG---DDPRFGVETRGYELEGSLNQLFFRLDHPILSDLRVRQAFAHAI 306

Query: 343 DFE 345
           + +
Sbjct: 307 NID 309