Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 511 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score = 85.5 bits (210), Expect = 5e-21
 Identities = 99/422 (23%), Positives = 173/422 (40%), Gaps = 66/422 (15%)

Query: 62  GKVTFG---ELGTYDNFNRFASRGVAAANTAELYDPLMFSPADEIDSYYPLIASKIRYSD 118
           GK+T     + G++D  + F  +  A A    ++D L +   D      P +A      D
Sbjct: 31  GKMTISSPQDPGSWDPIDTFLVQWAAVATN--IFDGLTYRGPDL--KLAPGLAESWEELD 86

Query: 119 DFTWLEIDLNPNARFHDGKPITAQDVEFSFEKFMAEGVPQ--YRVYYQDVKSVKAIAERT 176
           +   +   L  N +FH+G+P  A  V+F+FE+ + E   +   R  Y  ++SV  I + T
Sbjct: 87  EGKRIRFKLRQNVKFHNGEPFNAAAVKFTFERLLGEQGAKGPQRSNYVAIESVDVIDDYT 146

Query: 177 VRIEMKQPNREQLFSLA-QSTRVLPKHYWQYKNLAEPLNEPPVGSGAYQIVDFKPGQSVT 235
           V +++K P+   L  LA     ++P  Y + K   +  N  PVG+GA++ V + P  ++ 
Sbjct: 147 VDMKLKAPDPVLLTKLAGYGGMIVPPAYIKEKG-EDNFNLNPVGTGAFKFVSYAPKNNIK 205

Query: 236 YKLNPDYWAKDLPVNVGRNNFAQIQYDYYRDDTVMLEAFKAGEFDLREENQAKFWATSYT 295
            + NPDYW        G    ++++Y +  + +  +   +AG  DL              
Sbjct: 206 LEANPDYWG-------GAPKLSELEYRFIAEPSTAVAELQAGRVDLVIPPTIPIGMIPVI 258

Query: 296 GRNFDQGLIKKEEIAHQAPASTQGFIFNTQRPVFQDVRVREALNYALDFEWMNKNLFYDQ 355
                +G  K + ++   P +     FNT+  +  D +VR+A+  A+D   + K++   Q
Sbjct: 259 -----EGDSKLQIVSVPGP-TVDALRFNTRDGITADPKVRKAIIMAVDRGTIVKSILAGQ 312

Query: 356 YQRTRSYFQNTEYEAQGLPNAAELAVLTPYKEQLPARVFTETYQPSVTDGSGRIRTQMRE 415
                S+             +A      P  + LP       Y P   DG+ +       
Sbjct: 313 ASEIASF------------QSALSFGYDPELKPLP-------YDP---DGAKK------- 343

Query: 416 AFALLKEAGWELKNKVMTNVKTGEPLSFELLIYSPTTERIAIPLQKNLQLMGIEMKIRTV 475
              LL EAG          VK G  L  ++     T   +A  +   L ++GI   I+  
Sbjct: 344 ---LLAEAG----------VKPGAALQIDIRGNDATMNEVAQVISSYLSMVGITATIKPY 390

Query: 476 DT 477
           +T
Sbjct: 391 ET 392