Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 531 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score = 82.4 bits (202), Expect = 4e-20
 Identities = 111/482 (23%), Positives = 194/482 (40%), Gaps = 58/482 (12%)

Query: 89  AELYDPLMFSPADEIDSYYPLIASKIRYSDDFTWLEIDLNPNARFHDGKPITAQDVEFSF 148
           +++YD L+    D   S  P +A +   S D       L PNA+FHDGKP+T+ DVEFS 
Sbjct: 64  SKIYDGLL--TYDYELSPKPSLAKEWSVSADGLEYVFHLQPNAKFHDGKPVTSADVEFSI 121

Query: 149 EKFMAEGVPQYRVYYQDVKSVKAIAERTVRIEMKQPNREQLFSLAQS-TRVLPKHYWQ-Y 206
            + + E  P+ R  + +V+S+        ++++ +P    + +LA S + V+PKH ++ +
Sbjct: 122 LR-LKEAHPRGRATFANVESIDTSNPLVAKVKLSKPAPGLITALASSESPVVPKHIFETF 180

Query: 207 KNLAEPLNEPPVGSGAYQIVDFKPGQSVTYKLNPDYWAKDLPVNVGRNNFAQIQYDYYRD 266
           K    P     +GSG + + ++ PG  +  + N +YW  D P    R    ++      D
Sbjct: 181 KPTDNPKPAQIIGSGPFVLKEWVPGSHILLEKNANYW--DAP----RPYLDRVIIRLIND 234

Query: 267 DTVMLEAFKAGEFDLREENQAKFWATSYTGRNFDQGLIKKEEIAHQAPASTQGFIFNTQR 326
                 A + GE D+         A +   R      +K ++  +         + N + 
Sbjct: 235 AGARAAALETGEGDIGPNPV----ALADLERLKSIPTLKVDDRIYAYAGQQNQLVINLEN 290

Query: 327 PVFQDVRVREALNYALDFEWMNKNLFYDQYQRTRSYFQNTEYEAQGLPNAAELAVLTPYK 386
              ++++VR+A+ +A+D   +   + Y                A   P      +   + 
Sbjct: 291 DYLKELKVRQAIAHAIDVPALIDTVLYGY--------------AVPSPTPISPGLAKFHN 336

Query: 387 EQLPARVFTETYQPSVTDGSGRIRTQMREAFALLKEAGWELKNKVMTNVKTGEPLSFELL 446
             +    F       + D +G  R          K+ G   K +V TN        F   
Sbjct: 337 PDIGFAKFDVALAEKLLDEAGFPR----------KDGGKRFKLRVTTN-------PFNPQ 379

Query: 447 IYSPTTERIAIPLQKNLQLMGIEMKIRTVDTTQYTKRL-RDRDFDMISHGFSANPYPSPN 505
            YS   + IA  L K    +GIE  I+  D   Y K +  DR +D+     S    P+  
Sbjct: 380 TYS---DFIAQALSK----IGIEADIQKFDFGTYVKVVYTDRAWDLSVESLSNTFDPTAG 432

Query: 506 L-LIVWNSNYMDS--SYNSAGANHPVIDALTEQIAKSQQDTEKLRALGSALDRVLQWNFY 562
           +  + W+ N+       N++   +P +D L E  A  + D EK  A       V+  +  
Sbjct: 433 VQRVYWSKNFKIGLPFSNASHYANPEVDRLLE-AAAVEPDIEKRAAFFKEFQAVVAKDLP 491

Query: 563 II 564
           +I
Sbjct: 492 VI 493