Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 535 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score =  113 bits (282), Expect = 2e-29
 Identities = 121/460 (26%), Positives = 207/460 (45%), Gaps = 61/460 (13%)

Query: 108 PLIASKIRYSDDFTWLEIDLNPNARFHDGKPITAQDVEFSFEKFMAEGVPQYRVYYQDVK 167
           PL+A     S D      +L P  ++HDGKP T+ DV FS    + E  P+ R  + ++ 
Sbjct: 83  PLLAKSWDVSADGLRYTFNLRPGVKWHDGKPFTSADVAFSIST-IKEVHPRGRNTFLNLT 141

Query: 168 SVKAIAERTVRIEMKQPNREQLFSLAQS-TRVLPKHYWQYKNLAE-PLNEPPVGSGAYQI 225
           +V+   E T  + + +P    + +LA + T ++PKH ++   + E P+N  P+G+G ++ 
Sbjct: 142 AVETPNELTAVLVLSKPAPYLITALAAAETPIVPKHLYEGTKVTENPVNLAPIGTGPFKF 201

Query: 226 VDFKPGQSVTYKLNPDYWAKDLPVNVGRNNFAQIQYDYYRDDTVMLEAFKAGEFDLREEN 285
            ++  G  + ++ N DYW  D P    R    ++   +  D +    A + GE DL    
Sbjct: 202 KEWVRGSHIVFERNADYW--DAP----RPYLDRLIVRFIPDASARAIAIETGEIDLAPST 255

Query: 286 QAKFWATSYTGRNFDQGLIKKEEIAHQAPASTQGFIFNTQRPVFQDVRVREALNYALDFE 345
                A S   R  +   +  +   +Q   S     FN ++ VF+DVRVR A  + +D  
Sbjct: 256 PV---AYSDLDRLKELPSLGFDTNGYQYTNSISRVEFNLEKDVFKDVRVRRAFAHVID-- 310

Query: 346 WMNKNLFYDQYQRTRSYFQNTEYEAQGLPNAAELAVLTPYKEQLPARVFTETYQPSVTDG 405
              +N+ ++          N  Y A          +  P   +L  + F    +    D 
Sbjct: 311 ---RNVIFNTV--------NFGYGA---------TIAGPINPKL-TKWFVNDLKTYPID- 348

Query: 406 SGRIRTQMREAFALLKEAGWELKNKVMTNVKTGEPLSFEL-LIYSPTTE---RIAIPLQK 461
                  ++ A ALL EAG++         +  + + F+L L Y P+TE   R A  +++
Sbjct: 349 -------LKAAEALLDEAGYK---------RGADGIRFKLNLDYVPSTEAYPRGADYIRQ 392

Query: 462 NLQLMGIEMKIRTVDTTQYTKRL-RDRDFDMISHGFSANPYPSPNL-LIVWNSNYMDS-- 517
            L  +G+++ +RT D   YTKR+  DRDFD    G S    P+  +  + W+ N+     
Sbjct: 393 ALAKVGVDVTVRTQDFATYTKRIYTDRDFDFAYEGMSNLFDPTVGVQRLYWSKNFKKGVP 452

Query: 518 SYNSAGANHPVIDALTEQIAKSQQDTEKLRALGSALDRVL 557
             N A  ++P +DAL E  A  + D +K  A    + ++L
Sbjct: 453 FSNGAAYSNPKVDALLE-AAAIEIDPDKRVAQWKEIQQIL 491