Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 553 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score = 93.2 bits (230), Expect = 3e-23
 Identities = 117/525 (22%), Positives = 213/525 (40%), Gaps = 75/525 (14%)

Query: 91  LYDPLMFSPADEIDSYYPLIASKIRY-------SDDFTWLEIDLNPNARFHDGKPITAQD 143
           ++DPL +   DE  ++   +A+++         +D   W ++ L  + ++HDGKP TA+D
Sbjct: 77  IFDPLFY--VDEKGAFVAALAAEVPTVENGGISADGLAW-KVKLRDDVKWHDGKPFTAED 133

Query: 144 VEFSFEKFMAEGVPQYR-VYYQDVKSVKAIAERTVRIEMKQPNREQLFSLAQSTRVLPKH 202
           V+F+ E  +      +R   ++ V+ +  ++   +  +M++P       LA ST + PKH
Sbjct: 134 VKFTLELLVDPNFRSWRKTGHEFVRDLTVVSPTEITWKMEKPFAPYPSILA-STFITPKH 192

Query: 203 YW--QYKNLAEPLNEPPVGSGAYQIVDFKPGQSVTYKLNPDYWAKDLPVNVGRNNFAQIQ 260
               +        N  PVG+GA++  +   G  +  + N DY+  D P      +  ++ 
Sbjct: 193 LLGAEADRNTAAYNNAPVGTGAFKWKERVAGDYILLEANADYFG-DGP------HIERLI 245

Query: 261 YDYYRDDTVMLEAFKAGEFDLREENQAKFWATSYTGRNFDQGLIKKEEIAHQAPAST-QG 319
           Y Y  D  V+   FK G+ D+        W T     ++D+      ++ +  P ST + 
Sbjct: 246 YKYVPDLNVLYTQFKTGDIDV----VGLQWITP---DHYDEAKDLSGKVVNVVPGSTIES 298

Query: 320 FIFNTQRPVFQDVRVREALNYALDFEWMNKNLFYDQYQRTRSYFQNTEYEAQGLPNAAEL 379
             FN +RP F+D  VREAL  A+D + + + L+Y     T SY     +           
Sbjct: 299 LSFNMERPQFKDPAVREALYAAIDKQSIIEALYYGLPAPTESYVPQQSFY---------- 348

Query: 380 AVLTPYKEQLPARVFTETYQPSVTDGSGRIRTQMREAFALLKEAGWELKNKVMTNVKTGE 439
                Y   LP   ++                 +  A  LL++AGW +        K G 
Sbjct: 349 -----YNPDLPKHEYS-----------------IERAKKLLEDAGW-VAGADGVRAKDGV 385

Query: 440 PLSF--ELLIYSPTTERIAIPLQKNLQLMGIEMKIRTV-DTTQYTKRLRDRDFDMISHGF 496
            L+F       +   E++   +Q++ + +G+EM I  +     +        FD +  G 
Sbjct: 386 KLAFTCSTTAGNHIREQVQQYIQQSFKDIGVEMTISNLPPAVMWGDYWMLSKFDSVIVGL 445

Query: 497 SANPYPSPNLLIVWNSNYMDSSYNSAG-----ANHPVIDALTEQIAKSQQDTEKLRALGS 551
                P P+    + S    +   S       AN  V + L +    S    E+ +A+  
Sbjct: 446 DFLTGPDPDTSDFFRSTSSPAKGGSGQNTWQFANKEVDELLAK--GGSLFVPEERKAVYL 503

Query: 552 ALDRVLQWNFYIIPQWHLSMYRVAMWDKFSRPSVLPKYSLGLDTW 596
            +  +++    ++P   L  Y      K    +V P  +  +DTW
Sbjct: 504 KIQEIMRKELPLLP---LFQYATVRGHKQGVENVKPNVNTRIDTW 545