Pairwise Alignments

Query, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 615 a.a., ABC transporter, substrate binding protein (peptide) from Agrobacterium fabrum C58

 Score =  363 bits (932), Expect = e-104
 Identities = 208/579 (35%), Positives = 312/579 (53%), Gaps = 25/579 (4%)

Query: 40  GEAKYPENFTHFDYVNPQAPKYGKVTFGELGTYDNFNRFASRGVAAANTAE--------L 91
           G  + P +F HF YVNP   K G++++G +GT+D+ N F  +G+               L
Sbjct: 36  GTPELPADFRHFPYVNPDVKKGGRISYGVVGTFDSLNPFVLKGMRTTARGVWDPEFGNLL 95

Query: 92  YDPLMFSPADEIDSYYPLIASKIRYSDDFTWLEIDLNPNARFHDGKPITAQDVEFSFEKF 151
           Y+ LM   +DE  S Y L+A  + + D+ ++++ ++NP A++ DGKP+T  DV F+F   
Sbjct: 96  YESLMLRSSDEPFSLYGLLAETVEWDDERSFIQFNINPRAKWSDGKPVTPDDVIFTFSLL 155

Query: 152 MAEGVPQYRVYYQDVKSVKAIAERTVRIEMK-QPNREQLFSLAQSTRVLPKHYWQYKNLA 210
             +G P +      V  ++ + +R VR     + NRE    LA ST +LPKH    +   
Sbjct: 156 KEKGRPPFNSRLDGVAKMEKVGDRGVRFTFNDKANRETPLILASSTPILPKHAIDPEKFE 215

Query: 211 EPLNEPPVGSGAYQIVDFKPGQSVTYKLNPDYWAKDLPVNVGRNNFAQIQYDYYRDDTVM 270
           +    P VGSG Y+I   +PG+ + ++ NPDYW KD+P  VG +N+ +I   Y+   T M
Sbjct: 216 QAGLGPVVGSGPYRIKTLRPGERIIWERNPDYWGKDIPGKVGFDNYDEISVTYFLQVTTM 275

Query: 271 LEAFKAGEFDLREENQA-------KFWATSYTGRNFDQGLIKKEEIAHQAPASTQGFIFN 323
            EAFK G+ D+  E  A         W  +Y      +G I K+    + P    G +FN
Sbjct: 276 FEAFKKGDIDIYPEGDAINGTSDTSHWGQAYNFPAVHRGDIVKDVFQPRLPTGMFGLVFN 335

Query: 324 TQRPVFQDVRVREALNYALDFEWMNKNLFYDQYQRTRSYFQNTEYEAQGLPNAA---ELA 380
           T+R  F D +VRE L+YALDFEW+N+N+    ++RT+SY+QN+   A G  NAA   ELA
Sbjct: 336 TRRATFADEKVREGLSYALDFEWLNRNILGGSFKRTQSYWQNSPLGAYG--NAADERELA 393

Query: 381 VLTPYKEQLPARVFTETYQPSVTDGSGRIRTQMREAFALLKEAGWELKNKVMTNVKTGEP 440
           +L    + +PA +   TY    TDG+G  R  ++ A   LKEAG+ +KN  M++   G  
Sbjct: 394 LLGDAAKTMPAELLAGTYAMPTTDGTGADRKVLKLAVDKLKEAGYSIKNGKMSDA-NGRQ 452

Query: 441 LSFELLIYSPTTERIAIPLQKNLQLMGIEMKIRTVDTTQYTKRLRDRDFDMISHGFSANP 500
           L+FE++  +P  ERIA+  Q++L L+G+ M IR+VD  QY  R    D+DMI     ++ 
Sbjct: 453 LAFEIMTQNPAQERIALAYQRSLNLIGVAMGIRSVDDGQYQARSNSFDYDMIIRSLPSSL 512

Query: 501 YPSPNLLIVWNSNYMDS--SYNSAGANHPVIDALTEQIAKSQQDTEKLRALGSALDRVLQ 558
            P    L  WNS   D+  S+N AG  +P ID + E + ++ + TE  +A   A DR+L 
Sbjct: 513 SPGMEQLNRWNSLSRDAQGSFNYAGVANPDIDRMIEALLQA-RSTEDFQAAVRAYDRLLV 571

Query: 559 WNFYIIPQWHLSMYRVAMWDKFSRPSVLPKYSLGLDTWW 597
              YIIP +++    VA W    RP + P       TWW
Sbjct: 572 AGHYIIPLYYIGAQWVARWKYIDRPDMTPISGNQKQTWW 610