Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., Inner membrane ABC transporter permease protein YejB from Xanthobacter sp. DMC5

 Score =  466 bits (1200), Expect = e-136
 Identities = 223/368 (60%), Positives = 289/368 (78%), Gaps = 8/368 (2%)

Query: 1   MLSYILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEV 60
           ML+YI+RR+ L+VPT+  I+ ++F +IQ APGGPVE+ IAQL G       R +GGG + 
Sbjct: 1   MLAYIVRRIALMVPTILGIMLVSFVVIQFAPGGPVERVIAQLTGEDVSATSRVSGGGSDF 60

Query: 61  AAPTDAPVSG--------YKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFG 112
           +    A  +G        Y+G++GLDP  ++E+ ++FGFDKP HER+ +M+ DYATFNFG
Sbjct: 61  SGAGAAAQAGAAAEMSSKYRGAQGLDPAFIKELEKQFGFDKPPHERFLKMITDYATFNFG 120

Query: 113 ESLFRGGDVIDLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVII 172
           +S FR   V++LI E++PVSISLGLW TL+ YLISIPLGI KA+  GSRFDVW+SAV+I+
Sbjct: 121 KSYFRDISVLELIGEKMPVSISLGLWMTLITYLISIPLGIGKAMRDGSRFDVWTSAVIIV 180

Query: 173 GYAIPGFLFAIILIILFASGNYFSWFPLRGLVSDNFASLPWYQQVLDYFWHLTLPTLAMV 232
           GYAIP FLFAI+LIILFA G++   FPLRGL S+NF  + W +++ DY WHL LP  +MV
Sbjct: 181 GYAIPSFLFAILLIILFAGGSFLDLFPLRGLTSENFWQMSWPERIADYAWHLVLPLTSMV 240

Query: 233 IGGFATLSMLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFPSAFIS 292
           +G FAT+++LTKNSFL+EI KQYV TAR KGL E R+LY HVFRNAMLI+IAGFPSAFI+
Sbjct: 241 LGAFATMTLLTKNSFLEEIRKQYVTTARMKGLSESRVLYGHVFRNAMLIVIAGFPSAFIA 300

Query: 293 IFFTGSMLIEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYMWVD 352
            FF+GS+LIE +FSL+G+GLLGFE+ + RDYP+VF++LYI +L GL++ +ISDLTYM VD
Sbjct: 301 AFFSGSLLIETIFSLDGLGLLGFESVLNRDYPVVFATLYIFSLAGLIVGLISDLTYMLVD 360

Query: 353 PRIDFEAR 360
           PRIDFE R
Sbjct: 361 PRIDFETR 368