Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., dipeptide ABC transporter, permease component (from data) from Pseudomonas simiae WCS417

 Score =  148 bits (374), Expect = 2e-40
 Identities = 99/368 (26%), Positives = 174/368 (47%), Gaps = 49/368 (13%)

Query: 1   MLSYILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEV 60
           M S+I RRL L++PT + I  + F +I++ PG PVE  +                     
Sbjct: 1   MFSFIARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMM--------------------- 39

Query: 61  AAPTDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLFRGGD 120
                       G R +DP++  +   R G +KP++ +Y   +   A  + GESL     
Sbjct: 40  ------------GERRVDPEMHAQAMERLGLNKPLYAQYLDYVGKLAQGDLGESLRTRTS 87

Query: 121 VIDLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGFL 180
           V        P ++ L + + L   ++ +  G+  A+  GS FD     + + GY++P F 
Sbjct: 88  VWTEFTALFPATLELSMAALLFAGILGLLAGVIAALKRGSLFDHGVMGISLAGYSMPIFW 147

Query: 181 FAIILIILFASGNYFSWFPLRGLVSDNFASLPWYQQVL---------DYFW----HLTLP 227
           + +ILI+ F+      W P+ G +   +   P    +L         D FW    HL LP
Sbjct: 148 WGLILIMFFSVS--LGWTPVSGRIDLLYDIEPRTGFMLIDTLLADEPDAFWDALHHLILP 205

Query: 228 TLAMVIGGFATLSMLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFP 287
            + +     A ++ +T++S L+ + + Y+ TA+AKGL   R+++ H  RNA++ ++    
Sbjct: 206 AIVLGTIPLAVIARMTRSSMLEVLREDYIRTAKAKGLSPARVVFVHGLRNALIPVLT-VV 264

Query: 288 SAFISIFFTGSMLIEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLT 347
              +     G++L E +FS  GIG    EA   RDYP+V + + ++  L +L++ + D+ 
Sbjct: 265 GLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARDYPVVQNGILLIACLVILVNFVVDIL 324

Query: 348 YMWVDPRI 355
           Y + +PRI
Sbjct: 325 YGFANPRI 332