Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., Dipeptide ABC transporter, permease protein DppB (TC 3.A.1.5.2) from Variovorax sp. SCN45

 Score =  150 bits (380), Expect = 4e-41
 Identities = 97/368 (26%), Positives = 176/368 (47%), Gaps = 49/368 (13%)

Query: 1   MLSYILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEV 60
           M  +IL R+ L+VPT   +  + FF+I++ PG P+E                        
Sbjct: 1   MFRFILTRVSLLVPTFIGMTLLAFFLIRLVPGDPIETMA--------------------- 39

Query: 61  AAPTDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLFRGGD 120
                       G RG+DP    E+   +GFDKP+  +Y   +      + G+S+     
Sbjct: 40  ------------GERGIDPARHAELRTAYGFDKPVIVQYGIYIGRVLHGDLGKSIITQDT 87

Query: 121 VIDLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGFL 180
           V+   +   P ++ L + + L   L+ +P GI  A+   S FD    A  + GY++P F 
Sbjct: 88  VMSEFLALFPATVELAVCAILFALLLGLPAGILAAVRRNSIFDHGVMATSLTGYSMPIFW 147

Query: 181 FAIILIILFASGNYFSWFPLRGLVSDNFASLPWYQQVL---------DYFW----HLTLP 227
           + ++LI+ F+      W P+ G ++  +   P    +L           FW    HL LP
Sbjct: 148 WGLLLILFFSV--QLGWTPVSGRIAVQYYIEPETGFLLIDSLRAGDTGAFWSALHHLILP 205

Query: 228 TLAMVIGGFATLSMLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFP 287
            + +     A ++ +T+++ L+ + + Y+ TARAKGL   R++  H  RNA++ ++    
Sbjct: 206 AVVLGTVPLAVIARMTRSAMLEVLGEDYIRTARAKGLSRLRVVGLHALRNALIPVVTVI- 264

Query: 288 SAFISIFFTGSMLIEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLT 347
              + + FTG++L E +FS  G+G    EA  +RDYP++   + ++  + +L++++ D+ 
Sbjct: 265 GLQVGVLFTGAILTETIFSWPGVGKWLIEAIGRRDYPVLQGGMLLLGGIVMLVNLLVDVA 324

Query: 348 YMWVDPRI 355
           Y  ++PRI
Sbjct: 325 YGVINPRI 332