Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  168 bits (426), Expect = 2e-46
 Identities = 106/355 (29%), Positives = 180/355 (50%), Gaps = 35/355 (9%)

Query: 1   MLSYILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEV 60
           +L +   RLL  +  + A++ +NF ++  APG PVE                        
Sbjct: 6   LLRHAASRLLQALGLVLAVVVLNFVLVHAAPGDPVE------------------------ 41

Query: 61  AAPTDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLFRGGD 120
              T A  SG     G+ P+++ ++  ++G DK +  +    L   A  + G S F    
Sbjct: 42  ---TIAGASG-----GMSPELMAQLRTQYGLDKSLPVQLAVYLGKVAQGDLGYSYFFNLP 93

Query: 121 VIDLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGFL 180
           V  +I ERLP ++ L L S LL +     LG+  +         + + + ++G+A P F 
Sbjct: 94  VTQMIGERLPATLLLVLSSVLLAFFAGTALGVLSSRKPNGWLSQFITVLSLVGFAAPVFW 153

Query: 181 FAIILIILFASGNYFSWFPLRGLVSDNFASLPWYQQVLDYFWHLTLPTLAMVIGGFATLS 240
             I+L+IL AS   F   P+ G+ S +      +  +LD   HL LPTL + +   A  S
Sbjct: 154 LGIMLVILLAS--VFPILPVAGMRSIDSTGAGGFADMLDVAQHLVLPTLTLSLVYLAQYS 211

Query: 241 MLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFPSAFISIFFTGSML 300
            L ++S LD +   ++ TARAKGL +R +LYKH  RNA+L ++      F ++   G++L
Sbjct: 212 RLARSSMLDVLGSDFIRTARAKGLADRVVLYKHALRNALLPVVTVLGLQFGNV-LAGAIL 270

Query: 301 IEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYMWVDPRI 355
           +E +F+  G+G L FE+ ++RDYP +   L   +++ ++++ ++DL Y ++DPRI
Sbjct: 271 VETVFNWPGLGRLAFESVLRRDYPTILGVLLFSSIVVVVMNQLTDLCYRFIDPRI 325