Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

 Score =  166 bits (420), Expect = 8e-46
 Identities = 105/358 (29%), Positives = 174/358 (48%), Gaps = 53/358 (14%)

Query: 1   MLSYILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEV 60
           ML +I +R+   +PT+  +ITI+FF+++ APG P                          
Sbjct: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNP-------------------------- 34

Query: 61  AAPTDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESL-FRGG 119
                     +   R L P+V+  I  ++G DKP+ E+Y   L +    +FG S  ++  
Sbjct: 35  ----------FSSERPLPPEVMANINAKYGLDKPVSEQYLTYLTNIVQGDFGPSFKYKDY 84

Query: 120 DVIDLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGF 179
            V +LI   LPVS+ +GL + +   ++ + +G   A+   +  D    +  ++G  +P F
Sbjct: 85  TVNELIASALPVSVKIGLAAFVFTVIMGVTVGTIAALKQNTWIDYTIMSTAMLGVVMPSF 144

Query: 180 LFAIILIILFASGNYFSWFPLRGLVSDNFASLPWYQQVLDYFWHLTLPTLAMVIGGFATL 239
           + A +LI +FA    FS FP  G          W     +Y   + LP L M +   AT 
Sbjct: 145 VLAPVLIYIFAI--QFSLFPAGG----------WQDGGFEY---MALPVLGMSLLYVATF 189

Query: 240 SMLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFPSAFISIFFTGSM 299
           + +T+ S ++ +N  ++ TARAKGL    I+ KH  + A+L +++    AF+ I  TGS+
Sbjct: 190 ARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVSYMGPAFVGI-ITGSV 248

Query: 300 LIEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYMWVDPRIDF 357
           +IE +F L GIG L   A   RDY LV     ++  L +L + I D+   ++DP+I +
Sbjct: 249 VIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDILLAYIDPKIRY 306