Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 357 a.a., putative inner membrane ABC transporter permease protein from Pseudomonas putida KT2440

 Score =  482 bits (1240), Expect = e-141
 Identities = 235/360 (65%), Positives = 290/360 (80%), Gaps = 5/360 (1%)

Query: 1   MLSYILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEV 60
           ML+YILRRLLL++PTL+ I+ INF I+Q APGGPVEQ IA+LEG   G   R  GGG EV
Sbjct: 1   MLAYILRRLLLIIPTLFGILIINFIIVQAAPGGPVEQMIAKLEG-FEGATSRIAGGGAEV 59

Query: 61  AAPTDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLFRGGD 120
           +       S Y+G++GLDP ++ EI R +GFDK   ER + M+K+YA  +FG+S FR   
Sbjct: 60  SVAG----SSYRGAQGLDPALIAEIERMYGFDKSPPERLWIMVKNYAQLDFGDSFFRDAK 115

Query: 121 VIDLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGFL 180
           VIDLI E++PVSISLGLWSTL++YL+SIPLGI+KA+ HGS FDVW+S+ +I+GYAIP FL
Sbjct: 116 VIDLIAEKMPVSISLGLWSTLIMYLVSIPLGIAKAVRHGSHFDVWTSSAIIVGYAIPAFL 175

Query: 181 FAIILIILFASGNYFSWFPLRGLVSDNFASLPWYQQVLDYFWHLTLPTLAMVIGGFATLS 240
           FAI+LI+LFA G+YF WFPLRGL S+NF  L    +VLDYFWHL LP  A+VIG FAT++
Sbjct: 176 FAILLIVLFAGGSYFDWFPLRGLTSNNFDELSTTGKVLDYFWHLVLPITALVIGNFATMT 235

Query: 241 MLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFPSAFISIFFTGSML 300
           +LTKNSFLDEINKQYVVTA+AKGL   R+LY HVFRNAML++IAGFPSAFI IFFTGS+L
Sbjct: 236 LLTKNSFLDEINKQYVVTAKAKGLSRSRVLYGHVFRNAMLLVIAGFPSAFIGIFFTGSLL 295

Query: 301 IEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYMWVDPRIDFEAR 360
           IEV+FSL+G+GL+ FEA I RDYP+VF +L+I TLLGL++ +I DLTY  VDPRIDF +R
Sbjct: 296 IEVIFSLDGLGLMSFEAAINRDYPVVFGTLFIFTLLGLVVKLIGDLTYTLVDPRIDFASR 355