Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., oligopeptide ABC transporter permease OppB from Pectobacterium carotovorum WPP14

 Score =  162 bits (409), Expect = 1e-44
 Identities = 105/358 (29%), Positives = 175/358 (48%), Gaps = 53/358 (14%)

Query: 1   MLSYILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEV 60
           ML +ILRR L  +PTL+ +ITI+FF++++APG P                          
Sbjct: 1   MLKFILRRCLEAIPTLFILITISFFMMRLAPGSP-------------------------- 34

Query: 61  AAPTDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESL-FRGG 119
                     + G R L P+V+  I  ++  + PI  +Y   L      +FG S  ++  
Sbjct: 35  ----------FTGERNLPPEVMANIEAKYHLNDPIMTQYGNYLLQLVQGDFGPSFKYKDY 84

Query: 120 DVIDLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGF 179
            V DL+    PVS  LG  + +L  +  +  G+  A++  +++D       + G  IP F
Sbjct: 85  SVNDLVATSFPVSAKLGAAAFILAVIFGVSAGVIAALNQNTKWDYTVMGFAMTGVVIPSF 144

Query: 180 LFAIILIILFASGNYFSWFPLRGLVSDNFASLPWYQQVLDYFWHLTLPTLAMVIGGFATL 239
           + A +L+++FA      W P  G          W      Y   + LP +A+ +   A++
Sbjct: 145 VVAPLLVLIFAIT--LRWLPGGG----------WNGGAPKY---MILPMVALSLSYIASI 189

Query: 240 SMLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFPSAFISIFFTGSM 299
           + +T+ S ++ ++  ++ TARAKGL  RRI+ +H  + A+L +++    AF+ I  TGSM
Sbjct: 190 ARITRGSMIEVLHSNFIRTARAKGLPMRRIVLRHALKPALLPVLSYMGPAFVGI-ITGSM 248

Query: 300 LIEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYMWVDPRIDF 357
           +IE +F L GIG L     + RDY LV S   ++  L +L + I D+ Y  +DP+I +
Sbjct: 249 VIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGGLTILFNAIIDVLYAVIDPKIRY 306