Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  144 bits (364), Expect = 3e-39
 Identities = 101/371 (27%), Positives = 176/371 (47%), Gaps = 52/371 (14%)

Query: 1   MLSYILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEV 60
           ML +ILRRL LV+PT   I  + F  + + PG PV             +M          
Sbjct: 1   MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVM------------IMA--------- 39

Query: 61  AAPTDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLFRGGD 120
                       G RG+ P+   ++    G DKP+ ++Y   +      + G SL     
Sbjct: 40  ------------GERGISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISLKSRIP 87

Query: 121 VIDLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGFL 180
           V D  V R   ++ LG+ + +    + IP+G+  A+  GS FD  +  + + GY++P F 
Sbjct: 88  VWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFW 147

Query: 181 FAIILIILFASGNYFSWFPLRGLVSDN--------------FASLPWYQQ--VLDYFWHL 224
           + ++LI+L +   +++  P+ G VSD                 +  W ++   +D   H+
Sbjct: 148 WGMMLIMLVSV--HWNLTPVSGRVSDMVFLDDTNPLTGFMLIDTAIWGEEGNFIDALAHM 205

Query: 225 TLPTLAMVIGGFATLSMLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIA 284
            LP + +     A +  +T++S L+ + + Y+ TARAKGL   R++  H  RNAML ++ 
Sbjct: 206 ILPAMVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVT 265

Query: 285 GFPSAFISIFFTGSMLIEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIIS 344
                 +     G++L E +FS  G+G    +A  +RDYP+V   + ++  + +L++++ 
Sbjct: 266 VI-GLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLV 324

Query: 345 DLTYMWVDPRI 355
           DL Y  V+PRI
Sbjct: 325 DLLYGVVNPRI 335