Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  174 bits (441), Expect = 3e-48
 Identities = 110/358 (30%), Positives = 180/358 (50%), Gaps = 53/358 (14%)

Query: 1   MLSYILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEV 60
           ML +ILRR L  +PTL+ +ITI+FF++++APG P                          
Sbjct: 1   MLKFILRRCLEAIPTLFILITISFFMMRLAPGSP-------------------------- 34

Query: 61  AAPTDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESL-FRGG 119
                     + G R L P+V+  I  ++  + PI  +YF  LK  A  +FG S  ++  
Sbjct: 35  ----------FTGERALPPEVLANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFKYKDY 84

Query: 120 DVIDLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGF 179
            V DL+    PVS  LG  + LL  +I +  G+  A+   +R+D       + G  IP F
Sbjct: 85  TVNDLVAASFPVSAKLGAAAFLLAVIIGVSAGVIAALKQNTRWDYTVMGFAMTGVVIPSF 144

Query: 180 LFAIILIILFASGNYFSWFPLRGLVSDNFASLPWYQQVLDYFWHLTLPTLAMVIGGFATL 239
           + A +L+++FA      W P  G          W    L +   + LP +A+ +   A++
Sbjct: 145 VVAPLLVMVFAIT--LQWLPGGG----------WNGGALKF---MILPMVALSLAYIASI 189

Query: 240 SMLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFPSAFISIFFTGSM 299
           + +T+ S ++ ++  ++ TARAKGL  RRI+++H  + A+L +++    AF+ I  TGSM
Sbjct: 190 ARITRGSMIEVLHSNFIRTARAKGLPMRRIIFRHALKPALLPVLSYMGPAFVGI-ITGSM 248

Query: 300 LIEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYMWVDPRIDF 357
           +IE ++ L GIG L     + RDY LV S   ++  L +L + I D+ Y  +DP+I +
Sbjct: 249 VIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY 306