Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., dipeptide ABC transporter, membrane subunit (DppB) (from data) from Escherichia coli BW25113

 Score =  141 bits (355), Expect = 3e-38
 Identities = 99/371 (26%), Positives = 175/371 (47%), Gaps = 52/371 (14%)

Query: 1   MLSYILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEV 60
           ML +ILRRL LV+PT   I  + F  + + PG PV             +M          
Sbjct: 1   MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVM------------IMA--------- 39

Query: 61  AAPTDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLFRGGD 120
                       G RG+ P+   ++    G DKP+ ++Y   +      + G S+     
Sbjct: 40  ------------GERGISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISMKSRIP 87

Query: 121 VIDLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGFL 180
           V +  V R   ++ LG+ + +    + IP+G+  A+  GS FD  +  + + GY++P F 
Sbjct: 88  VWEEFVPRFQATLELGVCAMIFATAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFW 147

Query: 181 FAIILIILFASGNYFSWFPLRGLVS-----DNFASLPWYQQVLDYFW-----------HL 224
           + ++LI+L +   +++  P+ G VS     D+   L  +  +    W           H+
Sbjct: 148 WGMMLIMLVSV--HWNLTPVSGRVSDMVFLDDSNPLTGFMLIDTAIWGEDGNFIDAVAHM 205

Query: 225 TLPTLAMVIGGFATLSMLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIA 284
            LP + +     A +  +T++S L+ + + Y+ TARAKGL   R++  H  RNAML ++ 
Sbjct: 206 ILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVT 265

Query: 285 GFPSAFISIFFTGSMLIEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIIS 344
                 +     G++L E +FS  G+G    +A  +RDYP+V   + ++  + +L++++ 
Sbjct: 266 VI-GLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLV 324

Query: 345 DLTYMWVDPRI 355
           DL Y  V+PRI
Sbjct: 325 DLLYGVVNPRI 335