Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., predicted oligopeptide transporter subunit (NCBI) from Escherichia coli BW25113

 Score =  517 bits (1332), Expect = e-151
 Identities = 251/364 (68%), Positives = 305/364 (83%), Gaps = 4/364 (1%)

Query: 1   MLSYILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEV 60
           M +Y++RRLLLV+PTLWAIITINFFI+QIAPGGPV+QAIA +E   +GV+    G G   
Sbjct: 1   MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEFGNAGVLPGAGGEGVRA 60

Query: 61  A-APT---DAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLF 116
           + A T   +   S Y+G RGLDP+V+ EIT R+GFDKPIHERYF+ML DY  F+FG+SLF
Sbjct: 61  SHAQTGVGNISDSNYRGGRGLDPEVIAEITHRYGFDKPIHERYFKMLWDYIRFDFGDSLF 120

Query: 117 RGGDVIDLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAI 176
           R   V+ LI + LPVSI+LGLWSTL+IYL+SIPLGI KA+++GSRFDVWSSA +IIGYAI
Sbjct: 121 RSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAVYNGSRFDVWSSAFIIIGYAI 180

Query: 177 PGFLFAIILIILFASGNYFSWFPLRGLVSDNFASLPWYQQVLDYFWHLTLPTLAMVIGGF 236
           P FLFAI+LI+ FA G+YF  FPLRGLVS NF SLPWYQ++ DY WH+TLP LA VIGGF
Sbjct: 181 PAFLFAILLIVFFAGGSYFDLFPLRGLVSANFDSLPWYQKITDYLWHITLPVLATVIGGF 240

Query: 237 ATLSMLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFPSAFISIFFT 296
           A L+MLTKNSFLDE+ KQYVVTARAKG+ E+ IL+KHVFRNAML++IAGFP+ FIS+FFT
Sbjct: 241 AALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMFFT 300

Query: 297 GSMLIEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYMWVDPRID 356
           GS+LIEVMFSL G+GLLG+EAT+ RDYP++F +LYI TL+GLLL+I+SD++Y  VDPRID
Sbjct: 301 GSLLIEVMFSLNGLGLLGYEATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRID 360

Query: 357 FEAR 360
           FE R
Sbjct: 361 FEGR 364