Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., dipeptide ABC transporter permease DppB from Escherichia coli ECRC62

 Score =  141 bits (355), Expect = 3e-38
 Identities = 99/371 (26%), Positives = 175/371 (47%), Gaps = 52/371 (14%)

Query: 1   MLSYILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEV 60
           ML +ILRRL LV+PT   I  + F  + + PG PV             +M          
Sbjct: 1   MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVM------------IMA--------- 39

Query: 61  AAPTDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLFRGGD 120
                       G RG+ P+   ++    G DKP+ ++Y   +      + G S+     
Sbjct: 40  ------------GERGISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISMKSRIP 87

Query: 121 VIDLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGFL 180
           V +  V R   ++ LG+ + +    + IP+G+  A+  GS FD  +  + + GY++P F 
Sbjct: 88  VWEEFVPRFQATLELGVCAMIFATAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFW 147

Query: 181 FAIILIILFASGNYFSWFPLRGLVS-----DNFASLPWYQQVLDYFW-----------HL 224
           + ++LI+L +   +++  P+ G VS     D+   L  +  +    W           H+
Sbjct: 148 WGMMLIMLVSV--HWNLTPVSGRVSDMVFLDDSNPLTGFMLIDTAIWGEDGNFIDAVAHM 205

Query: 225 TLPTLAMVIGGFATLSMLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIA 284
            LP + +     A +  +T++S L+ + + Y+ TARAKGL   R++  H  RNAML ++ 
Sbjct: 206 ILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVT 265

Query: 285 GFPSAFISIFFTGSMLIEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIIS 344
                 +     G++L E +FS  G+G    +A  +RDYP+V   + ++  + +L++++ 
Sbjct: 266 VI-GLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLV 324

Query: 345 DLTYMWVDPRI 355
           DL Y  V+PRI
Sbjct: 325 DLLYGVVNPRI 335