Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 333 a.a., ABC transporter, membrane spanning protein (peptide) from Agrobacterium fabrum C58

 Score =  150 bits (378), Expect = 6e-41
 Identities = 102/354 (28%), Positives = 179/354 (50%), Gaps = 40/354 (11%)

Query: 5   ILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEVAAPT 64
           +LR L+  VPT++ I+T+ FF++Q+APG   +   A+                       
Sbjct: 16  LLRNLIQAVPTMFVIVTLGFFVLQLAPGDAADYMAAE----------------------- 52

Query: 65  DAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLFRGGDVIDL 124
                    S     + V +I R FG D P+ ++        A F+ G S   G  V DL
Sbjct: 53  ---------SGAATQETVADIRRAFGLDLPLLDQLANYYTSLAHFSLGISPRYGVPVADL 103

Query: 125 IVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGFLFAII 184
           I+ERLP +++L + + ++  L+ I  G   A++     D   S   ++ Y++P F   +I
Sbjct: 104 IMERLPGTLTLMVLAIVIALLVGIAAGTIMALNATRAADRILSVASLLFYSVPTFWIGLI 163

Query: 185 LIILFASGNYFSWFPLRGLVSDNFASLPWYQQVLDYFWHLTLPTLAMVIGGFATLSMLTK 244
            II+F+      W P  G+ +   AS   +  ++D   +  LP  ++ +   A  + LT+
Sbjct: 164 FIIVFSV--KLGWLPAGGMKTIG-ASSGGFGWLIDRVSYALLPATSLALYYMAIYARLTR 220

Query: 245 NSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLII--IAGFPSAFISIFFTGSMLIE 302
           +S L+ I + +V TA+AKGL  R+++ +HV RNA++ I  +AG   A I     G+++IE
Sbjct: 221 SSILEVIGQDHVRTAKAKGLAPRQVVLRHVLRNALIPITTVAGIHVAGI---LGGAIVIE 277

Query: 303 VMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYMWVDPRID 356
            +FS  G+G L F+A + R+Y L+   + + ++L + ++ I D+    +DPRI+
Sbjct: 278 TVFSWPGMGRLAFDAVMAREYTLLLGIMLVSSVLVICVNAIVDIIQAALDPRIE 331