Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 316 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  151 bits (382), Expect = 2e-41
 Identities = 99/360 (27%), Positives = 176/360 (48%), Gaps = 44/360 (12%)

Query: 1   MLSYILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEV 60
           ML+ ++RRL+ ++ TL+A+  I + ++ + PG P                          
Sbjct: 1   MLAVLIRRLVSLIITLFAVSLIIYVVMGLLPGDPA------------------------- 35

Query: 61  AAPTDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLFRGGD 120
                A + G   S    P  +  + ++ G D+P+  RY   L      + G+S   G  
Sbjct: 36  -----AIMLGTSAS----PDTLAALQKQMGLDQPLPLRYLHWLAGVFRGDLGQSYTYGVP 86

Query: 121 VIDLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGFL 180
           V  LI+ERL V++ L L +  L   I+IPLG++ A +     D  +     +G A+PGF 
Sbjct: 87  VAGLIIERLAVTLPLALLAIFLSVTIAIPLGVAAAQNRNGALDFAAGLFSHVGIAVPGFW 146

Query: 181 FAIILIILFASGNYFSWFPLRGLVSDNFASLPWYQQVLDYFWHLTLPTLAMVIGGFATLS 240
             ++LII+F++     W P  G          W          L LP +A+ +     L+
Sbjct: 147 VGLLLIIVFST--TLGWMPSGGFPG-------WSPSFSAGLVALVLPAIALALSQAGVLT 197

Query: 241 MLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFPSAFISIFFTGSML 300
            + +++ L+ +N+ +V TARAKGL ER  L++H   NAM+ ++      F +    G++L
Sbjct: 198 RVCRSAVLEVMNEDFVRTARAKGLSERVALWRHAVPNAMIPVVTMIGLQF-TFLIAGAVL 256

Query: 301 IEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYMWVDPRIDFEAR 360
           +E +F+L G+G L ++A  QRD  ++ S +   + L ++++ + D+ Y+++DPR+   AR
Sbjct: 257 VENVFNLPGLGRLAYQALTQRDIVVMQSVVLFFSALVIIMNFVVDIAYLFIDPRLRAGAR 316