Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 307 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  153 bits (386), Expect = 7e-42
 Identities = 98/356 (27%), Positives = 176/356 (49%), Gaps = 53/356 (14%)

Query: 1   MLSYILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEV 60
           M+S+ILRRL   VPTL+ ++TI+FF+++ APGGP                          
Sbjct: 1   MISFILRRLASAVPTLFIVVTISFFLMRFAPGGP-------------------------- 34

Query: 61  AAPTDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGES-LFRGG 119
                     +   R L PQ +E + R +  D+P+  +Y   L++  T +FG S +++  
Sbjct: 35  ----------FNLERPLPPQTMENLMRTYHLDEPLWRQYLIYLRNAVTGDFGPSYIYKDN 84

Query: 120 DVIDLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGF 179
            V  LI + LP S+ LG ++ LL  +  +  G   A+   S FD    ++  +G  +P F
Sbjct: 85  TVAQLIGKGLPYSLELGSYALLLALVGGVLAGTLAALRQNSAFDFSLMSISTVGITVPNF 144

Query: 180 LFAIILIILFASGNYFSWFPLRGLVSDNFASLPWYQQVLDYFWHLTLPTLAMVIGGFATL 239
           + A +L ++FA         + GL+        W    L Y   L LP +A+ +   A +
Sbjct: 145 VVAPVLTLVFAV--------ILGLLPAG----SWGDGSLRY---LILPMIALALPQLAVI 189

Query: 240 SMLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFPSAFISIFFTGSM 299
           + LT+ + ++ +   ++ TA+A GL  R ++  H  R AML +++ + +   +   TGS 
Sbjct: 190 ARLTRGAMIEALRMDHIRTAKAYGLPARSVVVLHAMRAAMLPVVS-YLAPCAAALLTGSA 248

Query: 300 LIEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYMWVDPRI 355
           +IE +F++ G+G       I RDY LV  ++ ++ +  ++ +++ D+ Y  +DPR+
Sbjct: 249 VIETIFTIPGVGRYFVLGAINRDYTLVMGTVVLVAIFVIVFNLLVDILYGLLDPRV 304