Pairwise Alignments

Query, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., ABC transporter, membrane spanning protein (peptide) from Agrobacterium fabrum C58

 Score =  458 bits (1179), Expect = e-134
 Identities = 211/362 (58%), Positives = 284/362 (78%), Gaps = 2/362 (0%)

Query: 1   MLSYILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEV 60
           M +YILRRL L++PT+  I+ I+F +IQ APGGPVEQ +AQL G      +R +GGG  +
Sbjct: 1   MGAYILRRLALMIPTIVGIMGISFLVIQFAPGGPVEQVVAQLTGQGDSASDRLSGGGDLM 60

Query: 61  AAPTDAPVSG--YKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLFRG 118
                   SG  Y+G++GLDP++++++ ++FGFDKP   R+ +M+ +Y  F+FG+S FR 
Sbjct: 61  GQSGGFDESGSKYRGAQGLDPELIKKLEKQFGFDKPPLTRFLEMMWNYIRFDFGDSFFRN 120

Query: 119 GDVIDLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPG 178
             VIDLI+++LPVS SLG W  ++ Y+ISIPLGI KA+  GS FDVW+S ++IIGYA+P 
Sbjct: 121 SSVIDLIIDKLPVSASLGFWILIISYVISIPLGIKKAVSDGSTFDVWTSGIIIIGYAVPS 180

Query: 179 FLFAIILIILFASGNYFSWFPLRGLVSDNFASLPWYQQVLDYFWHLTLPTLAMVIGGFAT 238
           FLF I+LI+LFA G++F WFPLRGLVSDNF  L W+Q+++DYFWHLTLP +A+ +  FAT
Sbjct: 181 FLFGILLIVLFAGGSFFDWFPLRGLVSDNFDQLNWWQKIIDYFWHLTLPLIALSLSAFAT 240

Query: 239 LSMLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFPSAFISIFFTGS 298
            ++LTKNSF+DEI KQYVVTARAKGL ER++LY HVFRNAMLI+IAGFP AFIS FFTGS
Sbjct: 241 TTLLTKNSFIDEIKKQYVVTARAKGLSERKVLYGHVFRNAMLIVIAGFPGAFISAFFTGS 300

Query: 299 MLIEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYMWVDPRIDFE 358
           +LIE +FSL+G+G LG+ + + RDYP+VF +L+I +L+GL++ ++SDL Y W+DPRIDFE
Sbjct: 301 LLIENIFSLDGLGRLGYLSVVNRDYPIVFGTLFIFSLMGLVVGLLSDLIYTWIDPRIDFE 360

Query: 359 AR 360
            R
Sbjct: 361 RR 362