Pairwise Alignments

Query, 352 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

 Score =  130 bits (327), Expect = 4e-35
 Identities = 74/226 (32%), Positives = 122/226 (53%), Gaps = 5/226 (2%)

Query: 123 SAPDSVNWLGTDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVLIGATQGYYGGWLDL 182
           + P + +W GTD  GRD+  R + G RIS++ G +  +++ LIG L GA  G+ GG  D 
Sbjct: 74  AGPSAEHWFGTDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDR 133

Query: 183 FGQRFIEVWSGMPTLFLLIILSSFVEPNFWWLLGIMVLFSWMSLVGVVRAEFLRCRNFDY 242
              R +E+   +P +FL+I+L +F   N   +   +   +W+ +  +VR + L  R+ ++
Sbjct: 134 VMMRILEILYAIPFMFLVIVLVTFFGRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEF 193

Query: 243 VRAAQAMGVSDMRIILRHMLPNAMVASLTMMPFILSGSVTTLTSLDFLGFGLPAGSPSLG 302
           + AA   GVS   II RH++PN +         ++   + T + L FLG G+     S G
Sbjct: 194 IEAAHVCGVSKWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWG 253

Query: 303 ELLAQGKANLQ-APW--LGISAFVVLSVMLTLLVFIGEAVRDAFDP 345
            LL +G   ++ A W  L  +AF+VL+  L    ++G+ +RDA DP
Sbjct: 254 ALLQEGANTMEVAIWQLLFPAAFMVLT--LFCFNYVGDGLRDALDP 297