Pairwise Alignments

Query, 352 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 290 a.a., putative Opine ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  136 bits (342), Expect = 8e-37
 Identities = 73/230 (31%), Positives = 131/230 (56%), Gaps = 3/230 (1%)

Query: 125 PDSVNWLGTDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVLIGATQGYYGGWLDLFG 184
           P +  WLGTD  GRDVL+R+IYG R+S+L GF+  +I+ ++G  +G   GY GG  D   
Sbjct: 62  PSAEFWLGTDTYGRDVLSRLIYGTRVSLLVGFVAVMIAMVVGSALGVIAGYVGGITDRLI 121

Query: 185 QRFIEVWSGMPTLFLLIILSSFVEPNFWWLLGIMVLFSWMSLVGVVRAEFLRCRNFDYVR 244
             F++V    PTL L +++++ +  +   L+  + +      V + RA  +  +  D+V 
Sbjct: 122 TGFVDVLLSFPTLLLGLMVAAMLGASLENLIIAIAITEIAPFVRIARAPTIALKQRDFVE 181

Query: 245 AAQAMGVSDMRIILRHMLPNAMVASLTMMPFILSGSVTTLTSLDFLGFGLPAGSPSLGEL 304
           A +++G    R++  H+LPN +   L +    ++ ++ T  SL F+G G+P  +P+ G +
Sbjct: 182 AGRSLGYGPGRLMTVHILPNMISEVLVLGALWMATAIRTEASLSFIGLGVPPPAPTWGSM 241

Query: 305 LAQGKANLQAPWLGISAFVVLSVMLTLLV--FIGEAVRDAFDPHLQRSRA 352
           + +G  N+   W  ++ F  L+++LT+L    +G+A+RDA DP  +  R+
Sbjct: 242 IREGFENILDAW-WLTVFPSLAILLTVLALSLLGDALRDANDPKTRSERS 290