Pairwise Alignments

Query, 352 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 350 a.a., Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  353 bits (907), Expect = e-102
 Identities = 177/329 (53%), Positives = 232/329 (70%), Gaps = 5/329 (1%)

Query: 20  WARFKANRRGFWSLWIFLLLFVVSLFAELIANDKPLLIQYDGAWYMPIVQRYSETQFGGE 79
           W RFK NR G+WSL IF +L V SLFAEL++ND+PL+++Y+G  Y P+V+ Y+ET FGG+
Sbjct: 19  WRRFKRNRLGYWSLLIFSVLVVGSLFAELLSNDRPLIVRYEGRTYFPLVKDYAETVFGGD 78

Query: 80  FDTEADYTDPYVVSLIEEKGQIIWPLIR---FHYDTINFDITGSVPSAPDSVNWLGTDDK 136
           F+T ADY DP++   I       W L     +   TIN+      PSAP   NWLGTDD+
Sbjct: 79  FETPADYLDPFIREQITRGDN--WALYAPNPYGAQTINYFAKSPNPSAPTWDNWLGTDDR 136

Query: 137 GRDVLARIIYGFRISVLFGFILTVISSLIGVLIGATQGYYGGWLDLFGQRFIEVWSGMPT 196
           GRD+LA++IYGFR+SVLF   LT I  ++GV+ GA QG++GG  DL  QRFIE+W  MP 
Sbjct: 137 GRDLLAQLIYGFRVSVLFALALTAIGVVLGVITGAIQGFFGGKTDLAFQRFIEIWGSMPE 196

Query: 197 LFLLIILSSFVEPNFWWLLGIMVLFSWMSLVGVVRAEFLRCRNFDYVRAAQAMGVSDMRI 256
           L+LLII S+   P+   LL ++ LF WMSL   VRAEFLR R  DYVRAA+AMG+S+ +I
Sbjct: 197 LYLLIIFSAVFSPSVGLLLILLSLFGWMSLSDYVRAEFLRNRQLDYVRAARAMGLSNAQI 256

Query: 257 ILRHMLPNAMVASLTMMPFILSGSVTTLTSLDFLGFGLPAGSPSLGELLAQGKANLQAPW 316
           I RH+LPN++   +T +PF +S ++  LTSLDFLG G+P G+PSLGELL QGK ++ A W
Sbjct: 257 IWRHVLPNSLTPVVTFLPFRMSAAILALTSLDFLGLGVPPGTPSLGELLNQGKGSIDAWW 316

Query: 317 LGISAFVVLSVMLTLLVFIGEAVRDAFDP 345
           + +S F VL V L LL F+G+A+RDA DP
Sbjct: 317 IALSTFAVLVVTLLLLTFMGDALRDALDP 345