Pairwise Alignments

Query, 352 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 302 a.a., Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  138 bits (348), Expect = 2e-37
 Identities = 75/230 (32%), Positives = 125/230 (54%), Gaps = 3/230 (1%)

Query: 119 GSVPSAPD--SVNWLGTDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVLIGATQGYY 176
           G + SAPD  S ++ GTD  GRD+L R+  G RIS++ G    +++ ++G L G+  GY 
Sbjct: 70  GMMSSAPDMASGHYFGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVIVGTLYGSLSGYL 129

Query: 177 GGWLDLFGQRFIEVWSGMPTLFLLIILSSFVEPNFWWLLGIMVLFSWMSLVGVVRAEFLR 236
           GG +D    R +E+ +  P +F +I+L +F   N   +   + + SW+ +  +VR + L 
Sbjct: 130 GGKIDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTLS 189

Query: 237 CRNFDYVRAAQAMGVSDMRIILRHMLPNAMVASLTMMPFILSGSVTTLTSLDFLGFGLPA 296
            +  +++ AAQ  GVS   I++RH++PN +   +     ++   +   + L FLG G   
Sbjct: 190 LKRKEFIEAAQVGGVSTASIVIRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQE 249

Query: 297 GSPSLGELLAQGKANLQ-APWLGISAFVVLSVMLTLLVFIGEAVRDAFDP 345
              S G LL+ G  +++ +PWL +     L V L    FIG+ +RDA DP
Sbjct: 250 PLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDP 299