Pairwise Alignments

Query, 352 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 341 a.a., predicted oligopeptide transporter subunit (NCBI) from Escherichia coli BW25113

 Score =  488 bits (1256), Expect = e-143
 Identities = 232/334 (69%), Positives = 279/334 (83%)

Query: 13  NPLTEARWARFKANRRGFWSLWIFLLLFVVSLFAELIANDKPLLIQYDGAWYMPIVQRYS 72
           +P+ +ARWARF+ NRRG+WSLWIFL+LF +SL +ELIANDKPLL++YDG+WY P+++ YS
Sbjct: 5   SPVNQARWARFRHNRRGYWSLWIFLVLFGLSLCSELIANDKPLLVRYDGSWYFPLLKNYS 64

Query: 73  ETQFGGEFDTEADYTDPYVVSLIEEKGQIIWPLIRFHYDTINFDITGSVPSAPDSVNWLG 132
           E+ FGG   ++ADY DP++   +E  G ++W  IRF   +INF      PS P   NWLG
Sbjct: 65  ESDFGGPLASQADYQDPWLKQRLENNGWVLWAPIRFGATSINFATNKPFPSPPSRQNWLG 124

Query: 133 TDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVLIGATQGYYGGWLDLFGQRFIEVWS 192
           TD  G DVLARI+YG RISVLFG +LT+ SS++GVL GA QGYYGG +DL+GQRFIEVWS
Sbjct: 125 TDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFIEVWS 184

Query: 193 GMPTLFLLIILSSFVEPNFWWLLGIMVLFSWMSLVGVVRAEFLRCRNFDYVRAAQAMGVS 252
           GMPTLFL+I+LSS V+PNFWWLL I VLF WMSLVGVVRAEFLR RNFDY+RAAQA+GVS
Sbjct: 185 GMPTLFLIILLSSVVQPNFWWLLAITVLFGWMSLVGVVRAEFLRTRNFDYIRAAQALGVS 244

Query: 253 DMRIILRHMLPNAMVASLTMMPFILSGSVTTLTSLDFLGFGLPAGSPSLGELLAQGKANL 312
           D  IILRHMLPNAMVA+LT +PFIL  S+TTLTSLDFLGFGLP GSPSLGELL QGK NL
Sbjct: 245 DRSIILRHMLPNAMVATLTFLPFILCSSITTLTSLDFLGFGLPLGSPSLGELLLQGKNNL 304

Query: 313 QAPWLGISAFVVLSVMLTLLVFIGEAVRDAFDPH 346
           QAPWLGI+AF+ ++++L+LL+FIGEAVRDAFDP+
Sbjct: 305 QAPWLGITAFLSVAILLSLLIFIGEAVRDAFDPN 338