Pairwise Alignments

Query, 352 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score =  128 bits (322), Expect = 2e-34
 Identities = 71/242 (29%), Positives = 127/242 (52%), Gaps = 5/242 (2%)

Query: 110 YDTINFDITGSVPSAPDSVNWLGTDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVLI 169
           YD  N+    ++ + P   +W G D  GRD+ +R++ G +IS+  G     I + IG L+
Sbjct: 63  YDAENYFDYDNLNNGPSLQHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLL 122

Query: 170 GATQGYYGGWLDLFGQRFIEVWSGMPTLFLLIILSSFVEPNFWWLLGIMVLFSWMSLVGV 229
           G   GYY GW D    R  +V    P + L I + + +      ++  + +FS  +   +
Sbjct: 123 GLLAGYYEGWWDRLIMRICDVLFAFPGILLAIAVVAVLGSGIANVIIAVAIFSIPAFARL 182

Query: 230 VRAEFLRCRNFDYVRAAQAMGVSDMRIILRHMLPNAMVASLTMMPFILSGSVTTLTSLDF 289
           VR   L  +   ++ +A+++G SDM ++LRH+LP  + + +      +  S+ +  SL F
Sbjct: 183 VRGNTLVLKQQTFIESARSIGASDMTVLLRHILPGTVSSIVVFFTMRIGTSIISAASLSF 242

Query: 290 LGFGLPAGSPSLGELLAQGKANLQ-APWLGISAFVVLSVMLTLLVF--IGEAVRDAFDPH 346
           LG G    +P  G +L + +A++  AP   ++ F  L++ LT+L F  +G+ +RDA DP 
Sbjct: 243 LGLGAQPPTPEWGAMLNEARADMVIAP--HVAVFPALAIFLTVLAFNLLGDGLRDALDPK 300

Query: 347 LQ 348
           ++
Sbjct: 301 IK 302