Pairwise Alignments

Query, 352 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  134 bits (338), Expect = 3e-36
 Identities = 111/358 (31%), Positives = 173/358 (48%), Gaps = 42/358 (11%)

Query: 20  WARFKANRRGFWSLWIFLLLFVVSLFAELIANDKPLLIQYDGAWYMPIVQRYSETQFGGE 79
           W R + +  G   L +  LL ++++FA+  A   PL  + + ++  P V R+++    G 
Sbjct: 32  WRRLRRSVTGMLGLVLVALLILIAIFADFFAPMNPL--ETNASFSPPQVVRFTDKD--GN 87

Query: 80  FDTEADYTDPYVVSLIEEKGQIIW-PLIRFHYDT---INFDITGS-------VPSAPD-- 126
           F   + +   Y  +   E   + + P++   YD    + F + GS       +P +    
Sbjct: 88  F---SPFPRVYATADTAELDPVTFQPIVGPDYDNPVYLGFFVKGSEYRLLGLIPMSRHFF 144

Query: 127 ------SVNWLGTDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVLIGATQGYYGGWL 180
                  V++LGTD  GRDVL+R IYG RIS+     +  I ++IG  +G   GY+GG L
Sbjct: 145 GSTDGKPVHFLGTDKFGRDVLSRAIYGSRISLAIALSVVAIVTVIGTSVGLISGYFGGPL 204

Query: 181 DLFGQRFIEVWSGMPTLFLLIILSSFV---EPNFWWLL---GIMVLFSWMSLVGVVRAEF 234
           D + QRF+EV    P L L + L+S +    P   +LL   G+M    W  +   VR + 
Sbjct: 205 DAWLQRFVEVVLAFPQLPLYLALTSLIPVTAPTTVFLLFVVGVMSALGWAQMSREVRGKT 264

Query: 235 LRCRNFDYVRAAQAMGVSDMRIILRHMLPNAMVASLTMMPFILSGSVTTLTSLDFLGFGL 294
           L     DYVRAA A+G +D RII +H+LPN M   +  +   +   V   + L FLGF +
Sbjct: 265 LALARIDYVRAAIAVGATDRRIIFQHILPNVMSHVIVAVTLHIPSVVLLESFLGFLGFAV 324

Query: 295 PAGSPSLGELLAQGKANLQA----PWLGISAFVVLSVMLTLLVF--IGEAVRDAFDPH 346
                S G L+ Q  A        PW+      V  V++T+  F  +G+ +RDA DP+
Sbjct: 325 KPPLISWG-LMLQDTATYSVIGSYPWI---LAPVGFVLVTVFAFNALGDGLRDAVDPY 378