Pairwise Alignments

Query, 352 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 282 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  144 bits (363), Expect = 3e-39
 Identities = 79/223 (35%), Positives = 130/223 (58%), Gaps = 3/223 (1%)

Query: 131 LGTDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVLIGATQGYYGGWLDLFGQRFIEV 190
           LGTD  GRDVLAR++ G +IS+L GF   + + + GV +G   GYY G+ D+   RF ++
Sbjct: 61  LGTDPLGRDVLARVVAGGKISLLVGFTSVIGAVIFGVAVGLVAGYYRGFWDMLVMRFADI 120

Query: 191 WSGMPTLFLLIILSSFVEPNFWWLLGIMVLFSWMSLVGVVRAEFLRCRNFDYVRAAQAMG 250
              MP + L I   + V  +    + ++++  W+    +VR   L  R  +++ +A+A+G
Sbjct: 121 QLAMPFILLAITFIAIVGGSLTNTIILLIISQWVQYARLVRGSVLTLREREFILSARAIG 180

Query: 251 VSDMRIILRHMLPNAMVASLTMMPFILSGSVTTLTSLDFLGFGLPAGSPSLGELLAQGKA 310
           V D RIIL+H+LPN +   + +M   ++ ++   +SL FLG G+    PS G +LA G+ 
Sbjct: 181 VKDWRIILQHLLPNLIGPVIVLMTLNVANNILLESSLTFLGLGVDPTIPSWGGMLADGRT 240

Query: 311 NLQAPWLGISAFVVLSVMLTL--LVFIGEAVRDAFDPHLQRSR 351
            LQ  W  +S F  L+++LT+  L  +G+ +RD+ DP  + SR
Sbjct: 241 YLQTAW-WVSVFPGLAILLTVLGLNLLGDWLRDSLDPTGRTSR 282