Pairwise Alignments

Query, 352 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 338 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  150 bits (378), Expect = 6e-41
 Identities = 79/217 (36%), Positives = 130/217 (59%), Gaps = 1/217 (0%)

Query: 130 WLGTDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVLIGATQGYYGGWLDLFGQRFIE 189
           + GTD  GRD+LAR++ G +IS+  G + +++S  IGVL GAT GY GG +D    RF+E
Sbjct: 119 FFGTDSNGRDMLARVMLGGQISIAVGILASLVSLGIGVLYGATAGYIGGRVDNVMMRFVE 178

Query: 190 VWSGMPTLFLLIILSSFVEPNFWWLLGIMVLFSWMSLVGVVRAEFLRCRNFDYVRAAQAM 249
           +   +P +FL+++L  F   +F  +  ++    W+ +  +VR + L  +  ++V AAQA+
Sbjct: 179 ILYSLPFVFLVVVLVVFFGRSFILIFLVIGAVEWLDMARIVRGQTLALKRREFVGAAQAL 238

Query: 250 GVSDMRIILRHMLPNAMVASLTMMPFILSGSVTTLTSLDFLGFGLPAGSPSLGELLAQGK 309
           G+SD +II RH++PN +   +  +  ++   +   + L FLG G+ A   S G L+++G 
Sbjct: 239 GLSDWQIIRRHIIPNTIGPVVVFVTVVVPKVILLESFLSFLGLGVQAPLTSWGALISEGA 298

Query: 310 ANLQ-APWLGISAFVVLSVMLTLLVFIGEAVRDAFDP 345
            N+Q APWL I   +   + L  L F+G+ +RDA DP
Sbjct: 299 NNIQSAPWLLIFPAIFFVLTLFSLNFVGDGLRDALDP 335