Pairwise Alignments

Query, 352 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 374 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  130 bits (326), Expect = 7e-35
 Identities = 104/353 (29%), Positives = 165/353 (46%), Gaps = 31/353 (8%)

Query: 20  WARFKANRRGFWSLWIFLLLFVVSLFAELIANDKPLLIQYDGAWYMPIVQRYSETQFGGE 79
           W  FK +R    +L + + ++VV+L     A + P+L      +Y P      +T  G  
Sbjct: 25  WWAFKRHRLAMAALVVTIAMYVVALVPGFFAINDPVLQNARATFYPPQRVHLIDTTDG-- 82

Query: 80  FDTEADY--------TDPYVVSLIEEKGQIIWPLIRF----HYDTIN-FDITGSVPSAPD 126
           F     Y         +      +E+ G+ I P+  F     Y  +  FD    + ++ D
Sbjct: 83  FSVGLHYYPLKLTRNPETLAAVFVEDTGKKI-PIQLFGRGYEYSVLGLFDTNIHLLASTD 141

Query: 127 SVNWL---GTDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVLIGATQGYYGGWLDLF 183
               L   G D  GRDV +R++ G +IS+  G +    S L+GV++G   GYYGG +D  
Sbjct: 142 KTRPLFLFGADRLGRDVFSRVVQGSQISLSIGLVGVFFSLLLGVVLGGISGYYGGRIDFV 201

Query: 184 GQRFIEVWSGMPTLFLLIILSSFVEPNFW-------WLLGIMVLFSWMSLVGVVRAEFLR 236
            QR I+    +PT+ + + +++ + P  W        +  I+ L  W  L  VVR  FL 
Sbjct: 202 MQRVIDFVLSLPTIPIWLAMAAAL-PQGWPATLQYMMITIILSLTGWAQLARVVRGRFLS 260

Query: 237 CRNFDYVRAAQAMGVSDMRIILRHMLPNAMVASLTMMPFILSGSVTTLTSLDFLGFGLPA 296
            R  ++V AA+  GV + RII RHMLP+     +  +   +   +   TSL FLG GL  
Sbjct: 261 LRTEEFVAAARLDGVPEGRIIFRHMLPSFSSHIIASVTLAVPAMILAETSLSFLGLGLQP 320

Query: 297 GSPSLGELLAQG---KANLQAPWLGISAFVVLSVMLTLLVFIGEAVRDAFDPH 346
            + S G LL +    ++   APWL +    V+ V +  L  +G+ +RDA DP+
Sbjct: 321 PTISWGVLLREAQNIRSIATAPWLFLPGVAVV-VAVMALNLLGDGLRDAADPY 372