Pairwise Alignments

Query, 352 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  131 bits (330), Expect = 2e-35
 Identities = 72/223 (32%), Positives = 124/223 (55%), Gaps = 4/223 (1%)

Query: 131 LGTDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVLIGATQGYYGGWLDLFGQRFIEV 190
           LGTD  GRDVLA I++G RIS+  G + T+I   IG+ IGA  GY+GG +D    + IE+
Sbjct: 110 LGTDSMGRDVLAGIVHGARISLTVGVVATLIGLTIGISIGAFAGYFGGVIDDILVKLIEI 169

Query: 191 WSGMPTLFLLIILSSFVEPNFWWLLGIMVLFSWMSLVGVVRAEFLRCRNFDYVRAAQAMG 250
           +  +P   LL++L +  +P+   +   + + +W  +  + RAEF   R  DYV AA+++G
Sbjct: 170 FQTLPNFVLLVVLVAIAQPSVTTVTSAIGIITWPLVARLTRAEFRAIREKDYVLAARSLG 229

Query: 251 VSDMRIILRHMLPNAMVASLTMMPFILSGSVTTLTSLDFLGFGLPAGSPSLGELLAQGKA 310
               RI+ + +LPNA+   +     +++G++    +L F+G G P    S G ++  G+ 
Sbjct: 230 YGHARIVFQEILPNALPPIIVTSSVMVAGAILMEAALSFMGLGDP-NRVSWGSMIGSGRD 288

Query: 311 NLQAPWLGISAFVVLSVMLTL--LVFIGEAVRDAFDPHLQRSR 351
            ++  W  ++A   L+++ T+  L  I + + DA +P     R
Sbjct: 289 VIRTAWY-LTALPGLAIVFTVISLNLISDGLNDALNPRFSEER 330