Pairwise Alignments

Query, 352 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 296 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  148 bits (374), Expect = 2e-40
 Identities = 81/236 (34%), Positives = 132/236 (55%), Gaps = 1/236 (0%)

Query: 110 YDTINFDITGSVPSAPDSVNWLGTDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVLI 169
           YD +  D+           +  GTD  GRD+ AR+    RIS+L GF   V+S+LIG +I
Sbjct: 55  YDELFIDLRARFAPPLTGYHIFGTDPLGRDIAARLFNAGRISLLVGFFAMVLSTLIGTVI 114

Query: 170 GATQGYYGGWLDLFGQRFIEVWSGMPTLFLLIILSSFVEPNFWWLLGIMVLFSWMSLVGV 229
           G   GYYGG +     RF++ +   P++FLL+ L++FV+P+ + +  I+ + SWM +  +
Sbjct: 115 GVVAGYYGGRIGAILMRFVDAFLSFPSIFLLLALAAFVKPSPFMITLIIAVTSWMEIARL 174

Query: 230 VRAEFLRCRNFDYVRAAQAMGVSDMRIILRHMLPNAMVASLTMMPFILSGSVTTLTSLDF 289
           V AE    R  D+V AA+ +G+ +  I+ R +LPNA+   +      ++ ++     + F
Sbjct: 175 VEAEVRSLRERDFVMAARMLGLPNGWIMFRELLPNAIGPIIVAATLTVARAILLEAYISF 234

Query: 290 LGFGLPAGSPSLGELLAQGKANL-QAPWLGISAFVVLSVMLTLLVFIGEAVRDAFD 344
           LG+G+    PS G +L   +  L +APWL I   V +++ +T   FIG+ +RDA D
Sbjct: 235 LGYGIQPPLPSWGNMLNGAQQYLDKAPWLAIIPGVAITLAVTSFNFIGDGLRDALD 290