Pairwise Alignments

Query, 352 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 391 a.a., ABC transporter, membrane spanning protein (oligopeptide) from Agrobacterium fabrum C58

 Score =  132 bits (331), Expect = 2e-35
 Identities = 87/225 (38%), Positives = 120/225 (53%), Gaps = 12/225 (5%)

Query: 131 LGTDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVLIGATQGYYGGWLDLFGQRFIEV 190
           LGTD  GRDVL+RIIYG RIS+  G +   +S ++G++IG   GY GG  DL  QR IEV
Sbjct: 167 LGTDRLGRDVLSRIIYGARISLTIGLLGVAMSFVLGIVIGGLAGYRGGTFDLIVQRIIEV 226

Query: 191 WSGMPTLFLLIILSSFVEPNFW----WLLGIMV---LFSWMSLVGVVRAEFLRCRNFDYV 243
              +P++ L + L++ + P  W      LGI +   +  W  L   VR++ L  R  DYV
Sbjct: 227 LQSIPSIPLWLALAA-IMPVTWSPILVYLGITIILGMLDWTGLARAVRSKLLALREEDYV 285

Query: 244 RAAQAMGVSDMRIILRHMLPNAMVASLTMMPFILSGSVTTLTSLDFLGFGLPAGSPSLGE 303
            +AQ MG    RII RH++P  M   +      + G +   T+L FLG GL     S G 
Sbjct: 286 LSAQLMGAGTPRIIGRHLIPGFMSHLIASATLTIPGMILGETALSFLGLGLRPPITSWGI 345

Query: 304 LLAQGKA---NLQAPWLGISAFVVLSVMLTLLVFIGEAVRDAFDP 345
           LL + ++       PWL I    V+ V+L    F G+ +RDA DP
Sbjct: 346 LLTEARSVSVIALYPWLLIPTIPVVLVILA-FNFFGDGLRDAADP 389