Pairwise Alignments

Query, 352 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 381 a.a., ABC transporter, membrane spanning protein (peptide) from Agrobacterium fabrum C58

 Score =  428 bits (1101), Expect = e-124
 Identities = 205/357 (57%), Positives = 264/357 (73%), Gaps = 25/357 (7%)

Query: 13  NPLTEARWARFKANRRGFWSLWIFLLLFVVSLFAELIANDKPLLIQYDGAWYMPIVQRYS 72
           +P T+ RW  FKANRRG+WS W+FL+LF +SL AE IANDKP+L  Y G   +P++  Y 
Sbjct: 21  SPTTKRRWQNFKANRRGYWSFWLFLILFFLSLIAEFIANDKPILASYKGEILVPVMVDYP 80

Query: 73  ETQFGGEFDTEADYTDPYVVSLIEEKGQIIWPLIRFHYDTINFDITGSVPSAP------- 125
           E +FGG F  + DY   ++   I   G +IWP IR+ Y T+N +I  S P+AP       
Sbjct: 81  EEKFGG-FLAQTDYKSSFIQDEINANGWMIWPPIRYSYQTVNSNIPHSAPTAPFWLMDEK 139

Query: 126 -----------------DSVNWLGTDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVL 168
                             ++NWLGTD++ RDV AR+IYGFRISVLFG  LT+ S+L+GV 
Sbjct: 140 ERCSAYPQGNADPGCTLGNLNWLGTDNQARDVTARMIYGFRISVLFGLTLTIASALVGVT 199

Query: 169 IGATQGYYGGWLDLFGQRFIEVWSGMPTLFLLIILSSFVEPNFWWLLGIMVLFSWMSLVG 228
            GA QGY+GGW DL  QRFIE+WS MP L++L+I+++ + P F+ LLGIM+LFSW+  VG
Sbjct: 200 AGAIQGYFGGWTDLLLQRFIEIWSSMPVLYILLIIAAILPPGFFVLLGIMLLFSWVGFVG 259

Query: 229 VVRAEFLRCRNFDYVRAAQAMGVSDMRIILRHMLPNAMVASLTMMPFILSGSVTTLTSLD 288
           +VRAEFLR RNF+YVRAA+A+GV +  I+ RH+LPNAMVA+LT +PFILSGS+TTLTSLD
Sbjct: 260 IVRAEFLRARNFEYVRAARALGVGNWTIMFRHLLPNAMVATLTFLPFILSGSITTLTSLD 319

Query: 289 FLGFGLPAGSPSLGELLAQGKANLQAPWLGISAFVVLSVMLTLLVFIGEAVRDAFDP 345
           FLGFG+P GSPSLGE++AQGK NLQAPWLG++AF  +S+ML+LL+F+GEAVRDAFDP
Sbjct: 320 FLGFGMPPGSPSLGEMIAQGKNNLQAPWLGLTAFFTMSIMLSLLIFVGEAVRDAFDP 376