Pairwise Alignments

Query, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., peptide ABC transporter ATP-binding protein from Pseudomonas simiae WCS417

 Score =  397 bits (1020), Expect = e-115
 Identities = 218/526 (41%), Positives = 321/526 (61%), Gaps = 9/526 (1%)

Query: 2   NDWVLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPK 61
           N  +L +++L +  G  G      + +S +IA GE +ALVGESGSGK++ A A + LLP 
Sbjct: 4   NPVLLNVEHLKIRVGEHGPL--AVDDLSFSIAPGEIVALVGESGSGKTMAARAAIGLLPL 61

Query: 62  GSAHYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAI 121
                  G + F   D    S  ALR IRG  IGM+FQEPMVSLNP  KIG+Q+ E L +
Sbjct: 62  -PMQVCGGRLDFQGRDLASVSTEALRAIRGASIGMVFQEPMVSLNPALKIGQQMSEALKL 120

Query: 122 HRGLRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIAD 181
           H  L      ++ +  L ++GI+  E  + +YPH+ SGG RQR+M+A  ++  P LLIAD
Sbjct: 121 HTDLDPPQIRERCLTMLRRIGIKAAERCLESYPHQFSGGMRQRIMLASVMLLRPALLIAD 180

Query: 182 EPTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNAC 241
           EPTTALD   Q  +++L+  L +E G A+LFI+HDLS+V R A +V VM+ G+ VE  + 
Sbjct: 181 EPTTALDCLAQLDVIELMLELTREQGTAILFISHDLSLVARYAHKVVVMRHGKAVEQGSI 240

Query: 242 HTLFAAPAHPYTQQLINADP-RGVPVPTAMDAPTLLQAEKLRVWFPIKGGYFRRTQAYIK 300
             +  AP   YT+QL+ A P RGV  P  +    L++ +++ +  P    ++ + Q + +
Sbjct: 241 EDILLAPKAEYTRQLLEALPRRGVLAPLPVSNEPLVEVDQVCIEHPGPTTFWGKRQ-HTR 299

Query: 301 AVTDMSFTLAKGQSLGLVGESGSGKSTTGMAILKLL-ASQGAIRFAGQDLQALKRREMLP 359
            V   S  +A G++L LVG SGSGK+T G +++ L+    G+IRF G D+     R    
Sbjct: 300 VVHSASLVIAPGETLALVGGSGSGKTTLGRSLVGLIKPCAGSIRFKGVDILKAANR---T 356

Query: 360 YRSKMQVVFQDPYSALNPRMSVAQVIGEGLRVHSQLNDDEIDHAICAVMQEVGLDVDTRH 419
           +R + Q++FQDPYS+LNPRM + +++ E LR    LN  E    +   ++++GL      
Sbjct: 357 HRLQCQMIFQDPYSSLNPRMKIGEILAEPLRHEPGLNAAERRERVTQTLKDIGLGEQFVE 416

Query: 420 RYPNEFSGGQRQRIAIARALVLKPEFILLDEPTSSLDRTVQAQVLDLLKDLQQKYQLTYL 479
           R+P++ SGGQRQR+AI RALV  P+ ++ DEP S+LD T+Q Q+L+L + LQ +Y    L
Sbjct: 417 RFPHQLSGGQRQRVAIGRALVRHPQLVIADEPISALDMTIQKQILELFERLQAQYGFACL 476

Query: 480 FISHDLAVIRALCHHTIVMKAGEIVEHGETQSLFENPSHPYTQQLV 525
           FISHDLA +  + H   VM  G +VE G  + +F++P HPYT+QL+
Sbjct: 477 FISHDLAAVERIAHRVAVMHQGNVVEVGAREQIFDHPQHPYTRQLL 522



 Score =  187 bits (475), Expect = 9e-52
 Identities = 109/236 (46%), Positives = 145/236 (61%), Gaps = 11/236 (4%)

Query: 24  VTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSAHYLSGSIHFGDVDTLRCSE 83
           V    SL IA GETLALVG SGSGK+    +++ L+        +GSI F  VD L+ + 
Sbjct: 300 VVHSASLVIAPGETLALVGGSGSGKTTLGRSLVGLIKP-----CAGSIRFKGVDILKAAN 354

Query: 84  RALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRGLRATAAEQKAIEWLGKVGI 143
           R  R     +  MIFQ+P  SLNP  KIG+ L E L    GL A    ++  + L  +G+
Sbjct: 355 RTHRL----QCQMIFQDPYSSLNPRMKIGEILAEPLRHEPGLNAAERRERVTQTLKDIGL 410

Query: 144 RHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPTTALDVSVQAQILDLLKSLQ 203
              E  +  +PH+LSGG+RQRV I  AL+  P+L+IADEP +ALD+++Q QIL+L + LQ
Sbjct: 411 G--EQFVERFPHQLSGGQRQRVAIGRALVRHPQLVIADEPISALDMTIQKQILELFERLQ 468

Query: 204 QELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTLFAAPAHPYTQQLINA 259
            + G A LFI+HDL+ V RIA RVAVM  G +VE  A   +F  P HPYT+QL+ A
Sbjct: 469 AQYGFACLFISHDLAAVERIAHRVAVMHQGNVVEVGAREQIFDHPQHPYTRQLLAA 524