Pairwise Alignments

Query, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 577 a.a., ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  460 bits (1184), Expect = e-134
 Identities = 267/563 (47%), Positives = 354/563 (62%), Gaps = 52/563 (9%)

Query: 5   VLKIDNLSVGF-GIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGS 63
           +L +  L V F G  G  + V  G+ LT+ RGETLALVGESG GKS TA A+LRLL  G+
Sbjct: 13  LLDVRGLDVFFLGSNGPVQAV-RGLDLTLQRGETLALVGESGCGKSTTALALLRLLAPGA 71

Query: 64  AHYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHR 123
              L GSI F   D L  S   LR +RG  I MIFQEPM SLNP+H IG Q+ ETL  H 
Sbjct: 72  V--LRGSIQFDGRDILALSPAQLREVRGREISMIFQEPMTSLNPVHTIGTQIEETLRRHE 129

Query: 124 GLRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEP 183
            L A AA ++AIE L  V I  P  +I+ +PH LSGG+RQRVMIAMA+  +P LL+ADEP
Sbjct: 130 KLSALAARKRAIELLDLVRIPEPHQRIDDHPHNLSGGQRQRVMIAMAVACKPRLLVADEP 189

Query: 184 TTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHT 243
           TTALDV++QAQIL+LL  L++EL MA+L ITHDL +V + ADRVAVM  G+ VE  +   
Sbjct: 190 TTALDVTIQAQILELLDGLRRELDMALLLITHDLGLVAQWADRVAVMYGGEKVEEASTSR 249

Query: 244 LFAAPAHPYTQQLI----------------------------------------NADPRG 263
           LFAAP+H YT+ L+                                        N+  R 
Sbjct: 250 LFAAPSHAYTRGLLGASLHAGSALHYVDARLPEIQTRLDAATGERSFALHVPEPNSKVRA 309

Query: 264 VPVPTAMDAPTLLQAEKLRVWFPIKGGYFRRTQAYIKAVTDMSFTLAKGQSLGLVGESGS 323
           +PV TA   P LL  + LR  +P +GG        + AV  +SF +  G+++GLVGESG 
Sbjct: 310 LPVRTAAAEP-LLSVQDLRTDYPKRGG------GVLHAVDGVSFDIRAGETVGLVGESGC 362

Query: 324 GKSTTGMAILKLL-ASQGAIRFAGQDLQALKRREMLPYRSKMQVVFQDPYSALNPRMSVA 382
           GKST    +L+L+  + G I F G D+  L  + + P+R ++Q+VFQDPY++LNPR SV 
Sbjct: 363 GKSTLSRTLLRLVNPASGRIVFDGTDIAQLSEKALKPWRRRVQMVFQDPYASLNPRRSVF 422

Query: 383 QVIGEGLRVHSQLNDDEIDHAICAVMQEVGLDVDTRHRYPNEFSGGQRQRIAIARALVLK 442
            +I   L+VH   +  E  + I A+++ VGL  D   R+PNEFSGGQRQRI IARALVL+
Sbjct: 423 DIIESVLKVHGVADRAERRNRIAAILERVGLPADAGRRFPNEFSGGQRQRIGIARALVLR 482

Query: 443 PEFILLDEPTSSLDRTVQAQVLDLLKDLQQKYQLTYLFISHDLAVIRALCHHTIVMKAGE 502
           P  ++LDEP S+LD +VQAQ+L+LL +L++ + L+YLFISHDL+V+R +    +VM  G+
Sbjct: 483 PSLVVLDEPVSALDVSVQAQILNLLVELKEDFGLSYLFISHDLSVVRYIADRVMVMSKGQ 542

Query: 503 IVEHGETQSLFENPSHPYTQQLV 525
           IVE G  + +++ P HPYT+ L+
Sbjct: 543 IVETGSHRDIWDRPQHPYTRSLI 565



 Score =  183 bits (465), Expect = 1e-50
 Identities = 106/236 (44%), Positives = 144/236 (61%), Gaps = 8/236 (3%)

Query: 26  EGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSAHYLSGSIHFGDVDTLRCSERA 85
           +GVS  I  GET+ LVGESG GKS  +  +LRL+   S     G I F   D  + SE+A
Sbjct: 342 DGVSFDIRAGETVGLVGESGCGKSTLSRTLLRLVNPAS-----GRIVFDGTDIAQLSEKA 396

Query: 86  LRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRGLRATAAEQKAIEWLGKVGIRH 145
           L+  R  R+ M+FQ+P  SLNP   +   +   L +H          +    L +VG+  
Sbjct: 397 LKPWRR-RVQMVFQDPYASLNPRRSVFDIIESVLKVHGVADRAERRNRIAAILERVGL-- 453

Query: 146 PEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPTTALDVSVQAQILDLLKSLQQE 205
           P      +P+E SGG+RQR+ IA AL+  P L++ DEP +ALDVSVQAQIL+LL  L+++
Sbjct: 454 PADAGRRFPNEFSGGQRQRIGIARALVLRPSLVVLDEPVSALDVSVQAQILNLLVELKED 513

Query: 206 LGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTLFAAPAHPYTQQLINADP 261
            G++ LFI+HDLS+VR IADRV VM  GQ+VET +   ++  P HPYT+ LI A P
Sbjct: 514 FGLSYLFISHDLSVVRYIADRVMVMSKGQIVETGSHRDIWDRPQHPYTRSLIAAVP 569



 Score =  165 bits (417), Expect = 5e-45
 Identities = 103/271 (38%), Positives = 156/271 (57%), Gaps = 26/271 (9%)

Query: 272 APTLLQAEKLRVWFPIKGGYFRRTQAYIKAVTDMSFTLAKGQSLGLVGESGSGKSTTGMA 331
           AP LL    L V+F    G        ++AV  +  TL +G++L LVGESG GKSTT +A
Sbjct: 10  APPLLDVRGLDVFFLGSNGP-------VQAVRGLDLTLQRGETLALVGESGCGKSTTALA 62

Query: 332 ILKLLAS----QGAIRFAGQDLQALKRREMLPYRSK-MQVVFQDPYSALNPRMSVAQVIG 386
           +L+LLA     +G+I+F G+D+ AL   ++   R + + ++FQ+P ++LNP  ++   I 
Sbjct: 63  LLRLLAPGAVLRGSIQFDGRDILALSPAQLREVRGREISMIFQEPMTSLNPVHTIGTQIE 122

Query: 387 EGLRVHSQLNDDEIDHAICAVMQEVGL----DVDTRHR----YPNEFSGGQRQRIAIARA 438
           E LR H +L+      A+ A  + + L     +   H+    +P+  SGGQRQR+ IA A
Sbjct: 123 ETLRRHEKLS------ALAARKRAIELLDLVRIPEPHQRIDDHPHNLSGGQRQRVMIAMA 176

Query: 439 LVLKPEFILLDEPTSSLDRTVQAQVLDLLKDLQQKYQLTYLFISHDLAVIRALCHHTIVM 498
           +  KP  ++ DEPT++LD T+QAQ+L+LL  L+++  +  L I+HDL ++        VM
Sbjct: 177 VACKPRLLVADEPTTALDVTIQAQILELLDGLRRELDMALLLITHDLGLVAQWADRVAVM 236

Query: 499 KAGEIVEHGETQSLFENPSHPYTQQLVRLSL 529
             GE VE   T  LF  PSH YT+ L+  SL
Sbjct: 237 YGGEKVEEASTSRLFAAPSHAYTRGLLGASL 267