Pairwise Alignments

Query, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 540 a.a., ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  401 bits (1030), Expect = e-116
 Identities = 228/522 (43%), Positives = 320/522 (61%), Gaps = 7/522 (1%)

Query: 5   VLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSA 64
           +L++  L++        + +  G+S  IA GE + +VGESGSGK++ A +++ L P  + 
Sbjct: 9   LLQVSGLTLALA---DGKALVHGISFDIAPGEMIGIVGESGSGKTLAARSLIGLAPP-AV 64

Query: 65  HYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRG 124
           H  +GSI F   +    S  ALR +RG RIGM+FQEPM SLNP   IG+QL E LA+H  
Sbjct: 65  HRTAGSIVFDGQEVTALSAGALRKLRGSRIGMVFQEPMTSLNPSMAIGRQLDEGLALHTT 124

Query: 125 LRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPT 184
           L       + +E L +V I+ P   ++AYPH  SGG RQR+M+A A++  P LLIADEPT
Sbjct: 125 LSPAQRRARILEMLERVRIQDPAAALSAYPHRFSGGMRQRIMLASAMLLRPSLLIADEPT 184

Query: 185 TALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTL 244
           TALD  VQ +++DL+  L ++ G A+L I+HDL +V R  DR+ VM  G++VE+N    L
Sbjct: 185 TALDAVVQREVMDLMVELTRDHGTAVLMISHDLPMVARYTDRMVVMHHGRIVESNRTAAL 244

Query: 245 FAAPAHPYTQQLINADPRGVPVPTAMDAPTLLQAEKLRVWFPIKGGYFRRTQAYIKAVTD 304
            +AP   YT++L+ A P   PV     A  +L+ + L + FP  GG   +     +A+  
Sbjct: 245 VSAPREDYTRKLLAAMPTRGPVREIPQAAPILEVDGLVLDFPAGGGLLSKRPPK-RALKG 303

Query: 305 MSFTLAKGQSLGLVGESGSGKSTTGMAILKLL-ASQGAIRFAGQDLQALKRREMLPYRSK 363
           +   +A G+ + LVG SGSGK+T G AI  LL  S G I F G+ + A +      YR++
Sbjct: 304 IDLRIAPGEVVALVGGSGSGKTTLGRAIAGLLQPSGGRILFEGKGI-ARRSEGWARYRAQ 362

Query: 364 MQVVFQDPYSALNPRMSVAQVIGEGLRVHSQLNDDEIDHAICAVMQEVGLDVDTRHRYPN 423
            Q+VFQDP S+L+PRM+V   IGE L     L        I  V+QEV L  +   RYP+
Sbjct: 363 CQMVFQDPASSLDPRMTVGASIGEALTGMPGLTPAARRGRILEVLQEVSLPAEVASRYPH 422

Query: 424 EFSGGQRQRIAIARALVLKPEFILLDEPTSSLDRTVQAQVLDLLKDLQQKYQLTYLFISH 483
           E SGGQRQR+AIARA+V +P FI+ DEP S+LD TV+AQ+L+L   LQ ++  + LFISH
Sbjct: 423 ELSGGQRQRVAIARAVVRRPAFIVADEPVSALDVTVRAQILELFAQLQSRHGFSCLFISH 482

Query: 484 DLAVIRALCHHTIVMKAGEIVEHGETQSLFENPSHPYTQQLV 525
           DLAV+  +    IVM+ GEIVE G    +F+ P H YT++L+
Sbjct: 483 DLAVVEQIADRVIVMRHGEIVEQGPRDEVFDRPHHDYTRELL 524



 Score =  172 bits (436), Expect = 3e-47
 Identities = 111/265 (41%), Positives = 151/265 (56%), Gaps = 17/265 (6%)

Query: 5   VLKIDNLSVGFGIAG---QARP---VTEGVSLTIARGETLALVGESGSGKSVTANAILRL 58
           +L++D L + F   G     RP     +G+ L IA GE +ALVG SGSGK+    AI  L
Sbjct: 275 ILEVDGLVLDFPAGGGLLSKRPPKRALKGIDLRIAPGEVVALVGGSGSGKTTLGRAIAGL 334

Query: 59  L-PKGSAHYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVE 117
           L P G      G I F      R SE   R     +  M+FQ+P  SL+P   +G  + E
Sbjct: 335 LQPSG------GRILFEGKGIARRSEGWAR--YRAQCQMVFQDPASSLDPRMTVGASIGE 386

Query: 118 TLAIHRGLRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPEL 177
            L    GL   A   + +E L +V +  P    + YPHELSGG+RQRV IA A++  P  
Sbjct: 387 ALTGMPGLTPAARRGRILEVLQEVSL--PAEVASRYPHELSGGQRQRVAIARAVVRRPAF 444

Query: 178 LIADEPTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVE 237
           ++ADEP +ALDV+V+AQIL+L   LQ   G + LFI+HDL++V +IADRV VM+ G++VE
Sbjct: 445 IVADEPVSALDVTVRAQILELFAQLQSRHGFSCLFISHDLAVVEQIADRVIVMRHGEIVE 504

Query: 238 TNACHTLFAAPAHPYTQQLINADPR 262
                 +F  P H YT++L+ A PR
Sbjct: 505 QGPRDEVFDRPHHDYTRELLAAAPR 529