Pairwise Alignments

Query, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 539 a.a., ABC transporter, ATP-binding protein from Pseudomonas putida KT2440

 Score =  389 bits (998), Expect = e-112
 Identities = 225/525 (42%), Positives = 322/525 (61%), Gaps = 10/525 (1%)

Query: 5   VLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSA 64
           ++++ +LSV +  AGQ       +S ++ +GETLA+VGESGSGKS  ANA+L LLP G+A
Sbjct: 6   LIEVRDLSVSYSFAGQRSQALRQLSFSLVQGETLAVVGESGSGKSTLANALLGLLP-GNA 64

Query: 65  HYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRG 124
               G +    VD  + SERA R +RG  IG++ Q+PMVSLNP  +IG+Q+ E L + RG
Sbjct: 65  RIDQGQLWVDGVDMAQASERARRQLRGRTIGLVPQDPMVSLNPTQRIGQQIAEALQLARG 124

Query: 125 LRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPT 184
            R    E K +  L +VG+  P ++   YPHELSGG RQRV+IA+AL  EP L+IADEPT
Sbjct: 125 RRYPGQEAKVLALLDQVGLDEPALRARQYPHELSGGMRQRVLIAIALAGEPRLIIADEPT 184

Query: 185 TALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTL 244
           +ALDV+VQ +ILD L+ L  E G+++L ITHDL +    ADR+ VM+ G+ VE  +   +
Sbjct: 185 SALDVTVQRRILDHLQLLVAERGISLLIITHDLGMACDRADRLLVMKQGEQVEHGSPRQI 244

Query: 245 FAAPAHPYTQQLINADPRGVP--VPTAMDAPT-LLQAEKLRVWFPIKGGYFRRTQAYIKA 301
                 PYT+ L++A P  VP   P A    T LL+   +   F + G        +  A
Sbjct: 245 LWGARQPYTRALLDAAPAFVPRRRPAAPRGQTPLLRLSHVGKRFELPG-----KNEHYTA 299

Query: 302 VTDMSFTLAKGQSLGLVGESGSGKSTTGMAILKL-LASQGAIRFAGQDLQALKRREMLPY 360
           + D+S  L  GQ+L +VGESGSGKST     L L   SQG + FAG+D+      +  P 
Sbjct: 300 LHDLSLELHAGQTLAIVGESGSGKSTALRIALGLEKPSQGQVVFAGEDVTGYTWSQFRPL 359

Query: 361 RSKMQVVFQDPYSALNPRMSVAQVIGEGLRVHSQLNDDEIDHAICAVMQEVGLDVDTRHR 420
           R ++Q+V Q+P++AL+PR +V   + E L     L  + ++     ++  V L V    R
Sbjct: 360 RRRIQLVQQNPFAALDPRFTVFDSVVEPLVSFGLLRGEALERKARELITRVQLPVQFLDR 419

Query: 421 YPNEFSGGQRQRIAIARALVLKPEFILLDEPTSSLDRTVQAQVLDLLKDLQQKYQLTYLF 480
            P E SGGQRQR+AIARAL L+PE +LLDEP S+LD +VQAQ+L LL +LQ++  + Y+ 
Sbjct: 420 LPRELSGGQRQRVAIARALALEPEVLLLDEPVSALDVSVQAQILALLDELQRELGMAYVL 479

Query: 481 ISHDLAVIRALCHHTIVMKAGEIVEHGETQSLFENPSHPYTQQLV 525
           +SHDLAV+ ++    +V++ G++VE G    +    +  YT+ L+
Sbjct: 480 VSHDLAVVASMADQVLVLRRGQVVEQGPALQVLSKSASAYTRALI 524



 Score =  160 bits (405), Expect = 1e-43
 Identities = 108/259 (41%), Positives = 153/259 (59%), Gaps = 10/259 (3%)

Query: 5   VLKIDNLSVGFGIAGQARPVT--EGVSLTIARGETLALVGESGSGKSVTANAILRLLPKG 62
           +L++ ++   F + G+    T    +SL +  G+TLA+VGESGSGKS TA  I   L K 
Sbjct: 278 LLRLSHVGKRFELPGKNEHYTALHDLSLELHAGQTLAIVGESGSGKS-TALRIALGLEKP 336

Query: 63  SAHYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIH 122
           S     G + F   D    +    R +R  RI ++ Q P  +L+P   +   +VE L   
Sbjct: 337 S----QGQVVFAGEDVTGYTWSQFRPLRR-RIQLVQQNPFAALDPRFTVFDSVVEPLVSF 391

Query: 123 RGLRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADE 182
             LR  A E+KA E + +V +  P   ++  P ELSGG+RQRV IA AL  EPE+L+ DE
Sbjct: 392 GLLRGEALERKARELITRVQL--PVQFLDRLPRELSGGQRQRVAIARALALEPEVLLLDE 449

Query: 183 PTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACH 242
           P +ALDVSVQAQIL LL  LQ+ELGMA + ++HDL++V  +AD+V V++ GQ+VE     
Sbjct: 450 PVSALDVSVQAQILALLDELQRELGMAYVLVSHDLAVVASMADQVLVLRRGQVVEQGPAL 509

Query: 243 TLFAAPAHPYTQQLINADP 261
            + +  A  YT+ LI+A P
Sbjct: 510 QVLSKSASAYTRALIDAIP 528