Pairwise Alignments

Query, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 531 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  453 bits (1166), Expect = e-132
 Identities = 256/539 (47%), Positives = 357/539 (66%), Gaps = 23/539 (4%)

Query: 5   VLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSA 64
           +L++ +L V FG     + V  G++  I  GE LALVGESGSGK+V+A ++LRL+     
Sbjct: 2   LLEVSDLRVAFG----GQEVVHGINFAIRAGEKLALVGESGSGKTVSALSLLRLVHNAE- 56

Query: 65  HYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRG 124
             +SG       D L  SER LRG+RG  + ++FQEPM +LNPL+ +G Q+ E L + +G
Sbjct: 57  --VSGRALLQGRDLLALSERQLRGVRGDEVAVVFQEPMSALNPLYTVGDQIREVLQLKKG 114

Query: 125 LRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPT 184
           L A  A   + E L   GI  P  + +A+PH+LSGG+RQR MIAMAL + P+LL+ADEPT
Sbjct: 115 LTARQAVAASHELLASTGIPEPARRADAFPHQLSGGQRQRAMIAMALASAPKLLLADEPT 174

Query: 185 TALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTL 244
           TALDVS++ QILDLL  LQ++ GMA+L ITHDL++VRR ADR+AVM+ G LVE      +
Sbjct: 175 TALDVSLRVQILDLLADLQRQHGMAVLLITHDLNLVRRFADRIAVMERGHLVEQGGVGDV 234

Query: 245 FAAPAHPYTQQLINADP-RGVPVPTAM-DAPTLLQAEKLRVWFPIK----GGYFRRTQAY 298
           FAAP HPYT++L+ + P R V  P    DA  +L+++ LRV +P+      G+FR+ +  
Sbjct: 235 FAAPEHPYTRKLLASKPERDVAEPVVRDDAAPVLRSQGLRVTYPVGLPGFRGWFRKGE-- 292

Query: 299 IKAVTDMSFTLAKGQSLGLVGESGSGKSTTGMAILKLLASQGAIRFAGQD-LQALKRREM 357
             AV      +A GQ+LG++GESGSGKST  +A L LL  QG+++  G D  +A K    
Sbjct: 293 FVAVKGADMAIAPGQTLGVIGESGSGKSTLALAALGLLPHQGSLQIDGTDWAKAKKAGRG 352

Query: 358 LPYRSKMQVVFQDPYSALNPRMSVAQVIGEGLRVHS-QLNDDEIDHAICAVMQEVGLDVD 416
              R ++QVVFQDP+S+L+PR++V Q++GEGL+VH   L+  +    + A + +VGL  D
Sbjct: 353 RALRQRIQVVFQDPFSSLSPRLTVEQIVGEGLQVHQPALSVAQRRERVVAALADVGLVDD 412

Query: 417 TR------HRYPNEFSGGQRQRIAIARALVLKPEFILLDEPTSSLDRTVQAQVLDLLKDL 470
                    RYP+EFSGGQRQR+AIARAL++ P+ ++LDEPTS+LD TVQ QVL LL+ L
Sbjct: 413 PERGGDWLQRYPHEFSGGQRQRLAIARALIVDPQLLVLDEPTSALDVTVQKQVLSLLQRL 472

Query: 471 QQKYQLTYLFISHDLAVIRALCHHTIVMKAGEIVEHGETQSLFENPSHPYTQQLVRLSL 529
           Q++  L+YL I+HD+ VI A+ H  +VMK G +VE G    +   P HPYT+ LV+ ++
Sbjct: 473 QRERGLSYLLITHDVDVIHAMAHEVMVMKDGAVVESGPVDRVLRAPEHPYTRALVQAAV 531