Pairwise Alignments

Query, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 623 a.a., Dipeptide transport ATP-binding protein DppD in protein degradation cluster from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  452 bits (1163), Expect = e-131
 Identities = 251/553 (45%), Positives = 345/553 (62%), Gaps = 32/553 (5%)

Query: 5   VLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSA 64
           VL +  L++ F   GQ       VSL + RGETLA+VGESGSGKSVTA A++RL+ +  A
Sbjct: 12  VLSVSGLNIAFHHEGQQVDAVRNVSLRLKRGETLAIVGESGSGKSVTALALMRLIEQSGA 71

Query: 65  HYLSGSIHFGD-----VDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETL 119
           +   G +         ++    S+  +R +RG  I MIFQEPM SLNP+  +G+Q+ E++
Sbjct: 72  NVRCGEMLLRRRNRQVIELSEQSDAQMRRVRGADIAMIFQEPMTSLNPVFTVGEQIAESI 131

Query: 120 AIHRGLRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLI 179
            +H+G     A  +A   L +V I   +  ++ YPH+LSGG RQRVMIAMAL   P +LI
Sbjct: 132 RLHQGASHEEALAEAKRMLDQVRIPESQAILSRYPHQLSGGMRQRVMIAMALSCRPAVLI 191

Query: 180 ADEPTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETN 239
           ADEPTTALDV++QAQIL L+K LQQE+ M ++FITHD+ +V  IADRV VM  G+ VET 
Sbjct: 192 ADEPTTALDVTIQAQILQLIKVLQQEMSMGVIFITHDMGVVADIADRVLVMYQGEAVETG 251

Query: 240 ACHTLFAAPAHPYTQQLINADP-----RGVPVP---------------------TAMDAP 273
           +   +F AP HPYTQ L+ A P     RG  +P                     T ++  
Sbjct: 252 SVEQIFHAPTHPYTQTLLAAVPQLGAMRGHSLPRRFPLISADEPALYESQIEQDTVVEGE 311

Query: 274 TLLQAEKLRVWFPIKGGYFRRTQAYIKAVTDMSFTLAKGQSLGLVGESGSGKSTTGMAIL 333
            +LQ   L   FP++ G F R    + AV ++SF L  G++L LVGESGSGKSTTG A+L
Sbjct: 312 PILQVRGLVTRFPLRSGLFNRVTREVHAVENISFDLWPGETLSLVGESGSGKSTTGRALL 371

Query: 334 KLLAS-QGAIRFAGQDLQALKRREMLPYRSKMQVVFQDPYSALNPRMSVAQVIGEGLRVH 392
           +L+ S QG I F GQ +  L   ++ P R  +Q +FQDPY++L+PR +V   I E LR+H
Sbjct: 372 RLVESRQGEIIFNGQRIDTLSAGKLQPLRRDIQCIFQDPYASLDPRQTVGYSIMEPLRIH 431

Query: 393 SQLNDDEIDHAICAVMQEVGLDVDTRHRYPNEFSGGQRQRIAIARALVLKPEFILLDEPT 452
                D     +  +++ VGL  +   RYP+EFSGGQRQRI IARAL L P+ I+ DE  
Sbjct: 432 GLGQGDAAAKRVAWLLERVGLRPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAV 491

Query: 453 SSLDRTVQAQVLDLLKDLQQKYQLTYLFISHDLAVIRALCHHTIVMKAGEIVEHGETQSL 512
           S+LD +V+ Q+++LL DLQ++  + YLFISHD+AV+  + H   VM  G+IVE G  +++
Sbjct: 492 SALDVSVRGQIINLLLDLQREMGIAYLFISHDMAVVERISHRVAVMYLGQIVEMGPRRAV 551

Query: 513 FENPSHPYTQQLV 525
           FENP HPYT++L+
Sbjct: 552 FENPQHPYTRKLM 564



 Score =  181 bits (458), Expect = 9e-50
 Identities = 114/243 (46%), Positives = 153/243 (62%), Gaps = 14/243 (5%)

Query: 26  EGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSAHYLSGSIHFGD--VDTLRCSE 83
           E +S  +  GETL+LVGESGSGKS T  A+LRL+         G I F    +DTL   +
Sbjct: 341 ENISFDLWPGETLSLVGESGSGKSTTGRALLRLVESRQ-----GEIIFNGQRIDTLSAGK 395

Query: 84  RALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRGLRATAAEQKAIEWL-GKVG 142
             L+ +R   I  IFQ+P  SL+P   +G  ++E L IH GL    A  K + WL  +VG
Sbjct: 396 --LQPLRRD-IQCIFQDPYASLDPRQTVGYSIMEPLRIH-GLGQGDAAAKRVAWLLERVG 451

Query: 143 IRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPTTALDVSVQAQILDLLKSL 202
           +R PE     YPHE SGG+RQR+ IA AL   P+++IADE  +ALDVSV+ QI++LL  L
Sbjct: 452 LR-PEHAWR-YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSVRGQIINLLLDL 509

Query: 203 QQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTLFAAPAHPYTQQLINADPR 262
           Q+E+G+A LFI+HD+++V RI+ RVAVM  GQ+VE      +F  P HPYT++L+ A P 
Sbjct: 510 QREMGIAYLFISHDMAVVERISHRVAVMYLGQIVEMGPRRAVFENPQHPYTRKLMAAVPV 569

Query: 263 GVP 265
             P
Sbjct: 570 ADP 572