Pairwise Alignments

Query, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 623 a.a., ATPase components of various ABC-type transport systems, contain duplicated ATPase from Enterobacter asburiae PDN3

 Score =  442 bits (1136), Expect = e-128
 Identities = 246/556 (44%), Positives = 342/556 (61%), Gaps = 32/556 (5%)

Query: 2   NDWVLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPK 61
           N  VL +  L++ F    Q  P  + +S T+ RGETLA+VGESGSGKSVTA A++RLL +
Sbjct: 9   NREVLAVHQLNIAFQEERQFIPAVQNLSFTLRRGETLAIVGESGSGKSVTALALMRLLEQ 68

Query: 62  GSAHYLSGSIHFGD-----VDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLV 116
                 S  +         +D    S   ++G+RG  I MIFQEPM SLNP+  +G+Q+ 
Sbjct: 69  TGGQISSEKMLLRRRNRQVIDLNELSGSQMQGVRGADIAMIFQEPMTSLNPVFPVGEQIA 128

Query: 117 ETLAIHRGLRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPE 176
           E++ +H+GL    A  +A   L  V I   +  +  YPH+LSGG RQRVMIAMAL   P 
Sbjct: 129 ESIRLHQGLSGDEALNEARRMLELVRIPEAQAILGRYPHQLSGGMRQRVMIAMALSCRPA 188

Query: 177 LLIADEPTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLV 236
           +LIADEPTTALDV++QAQIL L+K LQQE+ M ++FITHD+ +V  IADRV VM  G  V
Sbjct: 189 VLIADEPTTALDVTIQAQILQLIKVLQQEMEMGVIFITHDMGVVADIADRVLVMHKGSAV 248

Query: 237 ETNACHTLFAAPAHPYTQQLINADPR-----GVPVP---------------------TAM 270
           ET     +F AP HPYT+ L+ A PR     G  +P                     T +
Sbjct: 249 ETGPVEQIFHAPVHPYTKALLAAVPRLGAMNGSDLPRRFPLISLEASEQQEDEREQDTVV 308

Query: 271 DAPTLLQAEKLRVWFPIKGGYFRRTQAYIKAVTDMSFTLAKGQSLGLVGESGSGKSTTGM 330
               +L+   L   FP++ G   R +  + AV ++SF L  G++L LVGESG GKSTTG 
Sbjct: 309 PGKPILEVRDLVTRFPLRSGVLNRVKREVHAVENVSFDLWPGETLALVGESGCGKSTTGR 368

Query: 331 AILKLLASQ-GAIRFAGQDLQALKRREMLPYRSKMQVVFQDPYSALNPRMSVAQVIGEGL 389
           A+L+L+ SQ G+I F G+ +  L    +   R  +Q +FQDPY++L+PR +V   I E L
Sbjct: 369 ALLRLVESQEGSITFNGERIDTLPDSRLQAVRRDIQFIFQDPYASLDPRHTVGYSIMEPL 428

Query: 390 RVHSQLNDDEIDHAICAVMQEVGLDVDTRHRYPNEFSGGQRQRIAIARALVLKPEFILLD 449
           RVH+ L+ +     +  +++ VGL  +   RYP+EFSGGQRQRI IARAL L P+ ++ D
Sbjct: 429 RVHNLLDGEAAQRRVAWLLERVGLKPEHAWRYPHEFSGGQRQRICIARALALNPKVVIAD 488

Query: 450 EPTSSLDRTVQAQVLDLLKDLQQKYQLTYLFISHDLAVIRALCHHTIVMKAGEIVEHGET 509
           E  S+LD +++AQ+++LL DLQ+   + +LFISHD+AV+  + H   VM  G+IVE G  
Sbjct: 489 ESVSALDVSIRAQIINLLLDLQRDMGIAFLFISHDMAVVERISHRVAVMFMGQIVEIGPR 548

Query: 510 QSLFENPSHPYTQQLV 525
           +++FENP HPYT++L+
Sbjct: 549 RAVFENPQHPYTRKLI 564



 Score =  188 bits (477), Expect = 6e-52
 Identities = 114/242 (47%), Positives = 155/242 (64%), Gaps = 12/242 (4%)

Query: 26  EGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSAHYLSGSIHFGD--VDTLRCSE 83
           E VS  +  GETLALVGESG GKS T  A+LRL+         GSI F    +DTL  S 
Sbjct: 341 ENVSFDLWPGETLALVGESGCGKSTTGRALLRLVESQE-----GSITFNGERIDTLPDSR 395

Query: 84  RALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRGLRATAAEQKAIEWLGKVGI 143
             L+ +R   I  IFQ+P  SL+P H +G  ++E L +H  L   AA+++    L +VG+
Sbjct: 396 --LQAVRRD-IQFIFQDPYASLDPRHTVGYSIMEPLRVHNLLDGEAAQRRVAWLLERVGL 452

Query: 144 RHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPTTALDVSVQAQILDLLKSLQ 203
           + PE     YPHE SGG+RQR+ IA AL   P+++IADE  +ALDVS++AQI++LL  LQ
Sbjct: 453 K-PEHAWR-YPHEFSGGQRQRICIARALALNPKVVIADESVSALDVSIRAQIINLLLDLQ 510

Query: 204 QELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTLFAAPAHPYTQQLINADPRG 263
           +++G+A LFI+HD+++V RI+ RVAVM  GQ+VE      +F  P HPYT++LI A P  
Sbjct: 511 RDMGIAFLFISHDMAVVERISHRVAVMFMGQIVEIGPRRAVFENPQHPYTRKLIAAVPVA 570

Query: 264 VP 265
            P
Sbjct: 571 DP 572