Pairwise Alignments

Query, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 603 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  451 bits (1161), Expect = e-131
 Identities = 248/549 (45%), Positives = 340/549 (61%), Gaps = 29/549 (5%)

Query: 5   VLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSA 64
           VL + NL+  F + G+ + V   VS  +  GET+A+VGESGSGKSVT+ +++RLL   S+
Sbjct: 6   VLSVRNLTTSFLVDGEWKSVVRDVSFDVKSGETVAIVGESGSGKSVTSLSLMRLLAPASS 65

Query: 65  HYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRG 124
           H + G +     + L  SER +RG+RG  I MIFQEPM SLNP+  IG+Q+ E L  H+G
Sbjct: 66  H-IEGEVLLNGRNLLTLSEREMRGVRGNDISMIFQEPMTSLNPIFTIGRQISEVLIRHKG 124

Query: 125 LRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPT 184
           L    A  + +  L KV I +   + + YPH+ SGG RQRVMIAMAL + P+LLIADEPT
Sbjct: 125 LSKQEARAETVRLLEKVRIPNAASRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPT 184

Query: 185 TALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTL 244
           TALDV++Q QILDL+K LQ+E GM++LFITHD+ +V  IADR  VM  G  VET A   +
Sbjct: 185 TALDVTIQGQILDLIKLLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGDAVETGATEDI 244

Query: 245 FAAPAHPYTQQLINA---------------------------DPRGVPVPTAMDAPTLLQ 277
           F    HPYT+ L++A                           +P+ V    A     +L 
Sbjct: 245 FRRGQHPYTRALLSAVPKLGSMHDRQWPTRFPVLDLKTGLSTEPQEVAETVACGQTPVLS 304

Query: 278 AEKLRVWFPIKGGYFRRTQAYIKAVTDMSFTLAKGQSLGLVGESGSGKSTTGMAILKLL- 336
            + L   FPI+ G + R    + AV ++SF L +G++L LVGESG GKSTTG +I++L+ 
Sbjct: 305 VKNLVTRFPIRSGLWARQTGAVHAVENVSFDLFQGETLSLVGESGCGKSTTGRSIMRLVE 364

Query: 337 ASQGAIRFAGQDLQALKRREMLPYRSKMQVVFQDPYSALNPRMSVAQVIGEGLRVHSQLN 396
            S G +   G D+  L    +   R  +Q++FQDP+S+LNPRM+V   I E    H   +
Sbjct: 365 PSSGDVSLDGYDVMRLDTVGLRNMRKSVQMIFQDPFSSLNPRMTVGTAISEPFIKHRLGS 424

Query: 397 DDEIDHAICAVMQEVGLDVDTRHRYPNEFSGGQRQRIAIARALVLKPEFILLDEPTSSLD 456
             +       ++++VGL  D  +RYP+EFSGGQRQRIAIARAL L P+ I+ DE  S+LD
Sbjct: 425 TKQAKEKTADLLEKVGLSADMANRYPHEFSGGQRQRIAIARALALDPKVIVADESVSALD 484

Query: 457 RTVQAQVLDLLKDLQQKYQLTYLFISHDLAVIRALCHHTIVMKAGEIVEHGETQSLFENP 516
            +++AQV +LL DLQQ   L +LFISHD+AV+  + H   VM  GEIVE G   ++F+NP
Sbjct: 485 VSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAAVFDNP 544

Query: 517 SHPYTQQLV 525
            HPYT++L+
Sbjct: 545 QHPYTKKLM 553



 Score =  186 bits (473), Expect = 2e-51
 Identities = 115/270 (42%), Positives = 158/270 (58%), Gaps = 19/270 (7%)

Query: 5   VLKIDNLSVGFGI-----AGQARPV--TEGVSLTIARGETLALVGESGSGKSVTANAILR 57
           VL + NL   F I     A Q   V   E VS  + +GETL+LVGESG GKS T  +I+R
Sbjct: 302 VLSVKNLVTRFPIRSGLWARQTGAVHAVENVSFDLFQGETLSLVGESGCGKSTTGRSIMR 361

Query: 58  LLPKGSAHYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVE 117
           L+   S     G +     D +R     LR +R   + MIFQ+P  SLNP   +G  + E
Sbjct: 362 LVEPSS-----GDVSLDGYDVMRLDTVGLRNMRKS-VQMIFQDPFSSLNPRMTVGTAISE 415

Query: 118 TLAIHRGLRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPEL 177
               HR      A++K  + L KVG+       N YPHE SGG+RQR+ IA AL  +P++
Sbjct: 416 PFIKHRLGSTKQAKEKTADLLEKVGLSAD--MANRYPHEFSGGQRQRIAIARALALDPKV 473

Query: 178 LIADEPTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVE 237
           ++ADE  +ALDVS++AQ+ +LL  LQQ L +A LFI+HD+++V R++ RVAVM  G++VE
Sbjct: 474 IVADESVSALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVE 533

Query: 238 TNACHTLFAAPAHPYTQQLINADPRGVPVP 267
                 +F  P HPYT++L+ A    VPVP
Sbjct: 534 IGPRAAVFDNPQHPYTKKLMAA----VPVP 559