Pairwise Alignments

Query, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 555 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

 Score =  494 bits (1272), Expect = e-144
 Identities = 261/526 (49%), Positives = 365/526 (69%), Gaps = 5/526 (0%)

Query: 5   VLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSA 64
           ++   N++V F +        + +S  + RGET+A+VGESGSGKSVTA  I+ LL K ++
Sbjct: 25  IIDARNIAVTFKVEHGTVEAVKDISFQLYRGETIAIVGESGSGKSVTARTIMGLLTKRAS 84

Query: 65  HYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRG 124
              S ++ F   D LR S R  R +RG RI MIFQEPM SLNP++ IG Q+VE + +H  
Sbjct: 85  VSKSATVRFNGDDILRFSSRQRRALRGNRISMIFQEPMSSLNPIYTIGSQIVEAIRVHSR 144

Query: 125 LRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPT 184
           L    AE +A++ L +V I  PE ++  YPH+LSGG+RQRVMIAMAL N+P++LIADEPT
Sbjct: 145 LSRKEAEARALDLLRQVQIPEPEARLKQYPHQLSGGQRQRVMIAMALSNDPDVLIADEPT 204

Query: 185 TALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTL 244
           TALDV+VQAQIL+L++ LQ++ GMA++ ITHDL+IV++ +D V VMQ G++ E N    L
Sbjct: 205 TALDVTVQAQILNLIRDLQKKRGMAVVLITHDLTIVKQFSDYVYVMQHGEMREHNTTERL 264

Query: 245 FAAPAHPYTQQLINADPRGVPVPTAMDAPTLLQAEKLRVWFPIK-GGYFRRTQAYIKAVT 303
           FAAP HPYT++L+ ++PRG   P   ++  LL A  +RV F ++ GG F+     + AV 
Sbjct: 265 FAAPQHPYTKRLLASEPRGTAKPLPENSGVLLTASGVRVSFMMRYGGLFKPELKELIAVD 324

Query: 304 DMSFTLAKGQSLGLVGESGSGKSTTGMAILKLLASQGA-IRFAGQDLQALKRREMLPYRS 362
            +  TL + ++LGLVGESGSGK+T G ++L+L    G  + F G+ +    R EM P RS
Sbjct: 325 SLGLTLKRHETLGLVGESGSGKTTFGQSLLRLNEPVGGEVIFDGERVDGRSRSEMRPLRS 384

Query: 363 KMQVVFQDPYSALNPRMSVAQVIGEGLRVH--SQLNDDEIDHAICAVMQEVGLDVDTRHR 420
           +MQ+VFQDP+++LNPRM++ Q+I EGL ++   +   + ++  +   ++  G+  +   R
Sbjct: 385 RMQIVFQDPFASLNPRMTIGQIIEEGLIINGLGRTKAERLER-VRDALEAAGMPGNILSR 443

Query: 421 YPNEFSGGQRQRIAIARALVLKPEFILLDEPTSSLDRTVQAQVLDLLKDLQQKYQLTYLF 480
           +P+EFSGGQRQRIAIARA+ L+PEFILLDEPTS+LD +VQAQ++DLL+ LQ +  L+YLF
Sbjct: 444 FPHEFSGGQRQRIAIARAVALEPEFILLDEPTSALDLSVQAQIIDLLRKLQDERGLSYLF 503

Query: 481 ISHDLAVIRALCHHTIVMKAGEIVEHGETQSLFENPSHPYTQQLVR 526
           ISHDL V+RALCH  IVM+ G IVE G  + +  NP   YTQ+LVR
Sbjct: 504 ISHDLKVVRALCHRVIVMQGGRIVEEGPVEDVLTNPKTEYTQRLVR 549



 Score =  167 bits (424), Expect = 7e-46
 Identities = 101/236 (42%), Positives = 143/236 (60%), Gaps = 11/236 (4%)

Query: 26  EGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSAHYLSGSIHFGDVDTLRCSERA 85
           + + LT+ R ETL LVGESGSGK+    ++LRL        + G + F        S   
Sbjct: 324 DSLGLTLKRHETLGLVGESGSGKTTFGQSLLRLNEP-----VGGEVIFDGERVDGRSRSE 378

Query: 86  LRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRGLRATAAE--QKAIEWLGKVGI 143
           +R +R  R+ ++FQ+P  SLNP   IG Q++E   I  GL  T AE  ++  + L   G+
Sbjct: 379 MRPLRS-RMQIVFQDPFASLNPRMTIG-QIIEEGLIINGLGRTKAERLERVRDALEAAGM 436

Query: 144 RHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPTTALDVSVQAQILDLLKSLQ 203
             P   ++ +PHE SGG+RQR+ IA A+  EPE ++ DEPT+ALD+SVQAQI+DLL+ LQ
Sbjct: 437 --PGNILSRFPHEFSGGQRQRIAIARAVALEPEFILLDEPTSALDLSVQAQIIDLLRKLQ 494

Query: 204 QELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTLFAAPAHPYTQQLINA 259
            E G++ LFI+HDL +VR +  RV VMQ G++VE      +   P   YTQ+L+ A
Sbjct: 495 DERGLSYLFISHDLKVVRALCHRVIVMQGGRIVEEGPVEDVLTNPKTEYTQRLVRA 550