Pairwise Alignments

Query, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 606 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  418 bits (1075), Expect = e-121
 Identities = 238/552 (43%), Positives = 333/552 (60%), Gaps = 35/552 (6%)

Query: 5   VLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSA 64
           +L ++ LSV FG +     V + +S  +  G T+A+VGESGSGKSVT+ + +RL     A
Sbjct: 9   LLSVEGLSVEFGDSR----VVDDISFRVEPGRTVAVVGESGSGKSVTSLSTMRLADMMGA 64

Query: 65  HYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRG 124
            Y +G I F   D L+ S++ +R IRG  I MIFQEPM SLNP+  IG Q+ E L +H  
Sbjct: 65  TYPTGKILFEGKDLLKASQKEMRSIRGKEIAMIFQEPMTSLNPVFTIGDQICEVLVLHEK 124

Query: 125 LRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPT 184
           L  TAA ++A + L  V +      ++ YPH+LSGG RQRVMIAMAL   P+LLIADEPT
Sbjct: 125 LGKTAAMEQAKQLLDMVRLPDAAELLHRYPHQLSGGMRQRVMIAMALACRPKLLIADEPT 184

Query: 185 TALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTL 244
           TALDV++QAQIL++++ LQ++LGM M+FITHD+ +V  +AD V VM  G+ VE      +
Sbjct: 185 TALDVTIQAQILNIMRDLQKKLGMGMVFITHDMGVVAEMADDVVVMWKGKKVEEGPVKDI 244

Query: 245 FAAPAHPYTQQLINADPR--------------------GVPV---------PTAMDAPTL 275
           FA P HPYT+ L++A PR                    G PV             D   L
Sbjct: 245 FANPQHPYTRALLSAVPRLGSMEGEAFPKRLPLTVLQDGQPVVIGEERVQDTAKYDQKPL 304

Query: 276 LQAEKLRVWFPIKGGYFRRTQAYIKAVTDMSFTLAKGQSLGLVGESGSGKSTTGMAILKL 335
           L  + L V F I+   F +    + AV  +SF +  G++L LVGESGSGKST G  I +L
Sbjct: 305 LSVKDLFVRFDIRKNLFGKATHRLSAVQKVSFDIHAGETLALVGESGSGKSTIGRTIQQL 364

Query: 336 -LASQGAIRFAGQDLQALKRREMLPYRSKMQVVFQDPYSALNPRMSVAQVIGEGLRVHSQ 394
             A  G I F G+    +   E    R ++Q +FQDP+++L+PR +V   I E +  H  
Sbjct: 365 QTAVSGEIAFNGRSYSQMSAAERFRMRQEVQYIFQDPFASLDPRKTVGFSIAEPINTHGL 424

Query: 395 LNDDE-IDHAICAVMQEVGLDVDTRHRYPNEFSGGQRQRIAIARALVLKPEFILLDEPTS 453
           +ND + +   +  +++ VGL  +   RYP+EFSGGQRQR+ IARAL   P+ I+ DE  S
Sbjct: 425 INDQKAVRRRVDELLERVGLSSEHAARYPHEFSGGQRQRVCIARALASDPKLIIADEALS 484

Query: 454 SLDRTVQAQVLDLLKDLQQKYQLTYLFISHDLAVIRALCHHTIVMKAGEIVEHGETQSLF 513
           +LD ++QAQ+++L  DLQ +  L YLFISHD+AV+  + H   V+  G+I+E G  Q +F
Sbjct: 485 ALDVSIQAQIINLFMDLQAERGLAYLFISHDMAVVEKMSHRVAVLYLGQIMELGSRQQVF 544

Query: 514 ENPSHPYTQQLV 525
           E P+H YT++L+
Sbjct: 545 ETPTHDYTRRLL 556



 Score =  166 bits (419), Expect = 3e-45
 Identities = 104/266 (39%), Positives = 150/266 (56%), Gaps = 9/266 (3%)

Query: 1   MNDWVLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLP 60
           + D  ++ D     FG A       + VS  I  GETLALVGESGSGKS     I +L  
Sbjct: 307 VKDLFVRFDIRKNLFGKATHRLSAVQKVSFDIHAGETLALVGESGSGKSTIGRTIQQLQT 366

Query: 61  KGSAHYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLA 120
                 +SG I F      + S      +R   +  IFQ+P  SL+P   +G  + E + 
Sbjct: 367 A-----VSGEIAFNGRSYSQMSAAERFRMRQ-EVQYIFQDPFASLDPRKTVGFSIAEPIN 420

Query: 121 IHRGLRATAAEQKAI-EWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLI 179
            H  +    A ++ + E L +VG+         YPHE SGG+RQRV IA AL ++P+L+I
Sbjct: 421 THGLINDQKAVRRRVDELLERVGLSSEHAA--RYPHEFSGGQRQRVCIARALASDPKLII 478

Query: 180 ADEPTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETN 239
           ADE  +ALDVS+QAQI++L   LQ E G+A LFI+HD+++V +++ RVAV+  GQ++E  
Sbjct: 479 ADEALSALDVSIQAQIINLFMDLQAERGLAYLFISHDMAVVEKMSHRVAVLYLGQIMELG 538

Query: 240 ACHTLFAAPAHPYTQQLINADPRGVP 265
           +   +F  P H YT++L++A P   P
Sbjct: 539 SRQQVFETPTHDYTRRLLSAVPVADP 564