Pairwise Alignments

Query, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 616 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  439 bits (1128), Expect = e-127
 Identities = 244/549 (44%), Positives = 340/549 (61%), Gaps = 29/549 (5%)

Query: 5   VLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSA 64
           VL + NL+  F + G  + V   +S  IA  ET+A+VGESGSGKSVT+ +I+RLL + ++
Sbjct: 18  VLSVQNLTTSFRVDGGWKSVVRNMSFDIAPRETVAIVGESGSGKSVTSLSIMRLLDRKTS 77

Query: 65  HYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRG 124
             + G +  G  D L   E  +R +RG  I MIFQEPM SLNP+  IGKQ+ E L +H+ 
Sbjct: 78  R-IEGKVMLGGRDLLALPEEEMRKVRGKDISMIFQEPMTSLNPIFPIGKQIAEALTVHQD 136

Query: 125 LRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPT 184
           + ++AA+ + I  L KV I +   +   YPH+ SGG RQRVMIAMAL ++P+LLIADEPT
Sbjct: 137 ISSSAAKAEVIRLLEKVRIPNAASRFGDYPHQFSGGMRQRVMIAMALASKPKLLIADEPT 196

Query: 185 TALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTL 244
           TALDV++Q QILDL+K LQ+E GM++LFITHD+ +V  +ADR  VM  G +VET     +
Sbjct: 197 TALDVTIQGQILDLIKQLQEEEGMSVLFITHDMGVVAEVADRTIVMFRGDVVETGTTDDI 256

Query: 245 FAAPAHPYTQQLINADPR----------------------GVPVPTAMDAPT-----LLQ 277
           F    HPYT+ L++A P+                        PV    D  +     +L 
Sbjct: 257 FHRGQHPYTRALLSAVPKLGSMRSRLLPARFPIIDIKTGESPPVVETKDTVSGGKTPILS 316

Query: 278 AEKLRVWFPIKGGYFRRTQAYIKAVTDMSFTLAKGQSLGLVGESGSGKSTTGMAILKLL- 336
            + L   F I+ G F R    + AV  +SF LA+G++L LVGESG GKSTTG +I +L+ 
Sbjct: 317 VKDLTTRFDIRSGLFGRKSGAVHAVEKVSFDLAEGETLSLVGESGCGKSTTGRSITRLIE 376

Query: 337 ASQGAIRFAGQDLQALKRREMLPYRSKMQVVFQDPYSALNPRMSVAQVIGEGLRVHSQLN 396
            + G +   G ++  L R  +   R  +Q+VFQDP+++L+PRMSV   I E    H    
Sbjct: 377 PTSGNVTLDGYEVLKLDRTTLRTMRRSVQMVFQDPFASLDPRMSVGTAIMEPFMEHRLGQ 436

Query: 397 DDEIDHAICAVMQEVGLDVDTRHRYPNEFSGGQRQRIAIARALVLKPEFILLDEPTSSLD 456
             +       ++++VGL  D   R+P+EFSGGQRQRIAIAR+L+L P+ I+ DE  S+LD
Sbjct: 437 KAQAREKAADLLEKVGLSPDMMKRFPHEFSGGQRQRIAIARSLMLDPKVIVADEAVSALD 496

Query: 457 RTVQAQVLDLLKDLQQKYQLTYLFISHDLAVIRALCHHTIVMKAGEIVEHGETQSLFENP 516
            +++AQV +LL DLQQ   L +LFISHD+AV+  + H   VM  GEIVE G   ++F+NP
Sbjct: 497 VSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAAVFDNP 556

Query: 517 SHPYTQQLV 525
            HPYT++L+
Sbjct: 557 QHPYTKKLM 565



 Score =  188 bits (478), Expect = 4e-52
 Identities = 109/267 (40%), Positives = 161/267 (60%), Gaps = 12/267 (4%)

Query: 1   MNDWVLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLP 60
           + D   + D  S  FG    A    E VS  +A GETL+LVGESG GKS T  +I RL+ 
Sbjct: 317 VKDLTTRFDIRSGLFGRKSGAVHAVEKVSFDLAEGETLSLVGESGCGKSTTGRSITRLIE 376

Query: 61  KGSAHYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLA 120
                  SG++     + L+     LR +R   + M+FQ+P  SL+P   +G  ++E   
Sbjct: 377 P-----TSGNVTLDGYEVLKLDRTTLRTMRRS-VQMVFQDPFASLDPRMSVGTAIMEPFM 430

Query: 121 IHRGLRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIA 180
            HR  +   A +KA + L KVG+    +K   +PHE SGG+RQR+ IA +L+ +P++++A
Sbjct: 431 EHRLGQKAQAREKAADLLEKVGLSPDMMK--RFPHEFSGGQRQRIAIARSLMLDPKVIVA 488

Query: 181 DEPTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNA 240
           DE  +ALDVS++AQ+ +LL  LQQ L +A LFI+HD+++V R++ RVAVM  G++VE   
Sbjct: 489 DEAVSALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGP 548

Query: 241 CHTLFAAPAHPYTQQLINADPRGVPVP 267
              +F  P HPYT++L++A    VPVP
Sbjct: 549 RAAVFDNPQHPYTKKLMSA----VPVP 571