Pairwise Alignments

Query, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 568 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

 Score =  407 bits (1045), Expect = e-118
 Identities = 239/542 (44%), Positives = 330/542 (60%), Gaps = 33/542 (6%)

Query: 5   VLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSA 64
           +L++ NL   F +          +S +I  G+TL +VGESGSGKSVTA +IL+++     
Sbjct: 7   LLEVRNLVTEFPLRTGVFRAVNDISFSIEPGKTLCVVGESGSGKSVTARSILQIIDS-PG 65

Query: 65  HYLSGSIHFGDVD-------TLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVE 117
           +  SGSI     D        L    RA+R +RG  I MIFQEPM SL+P+H +G Q+ E
Sbjct: 66  YITSGSIILNKADGSSVDLAKLDPRGRAIRAVRGADIAMIFQEPMSSLSPVHTVGDQITE 125

Query: 118 TLAIHRGLRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPEL 177
            L +H  +    A  +AIE L +V I +PE  ++ Y  + SGG RQR MIAMAL  +P+L
Sbjct: 126 VLRLHLKMSKAQARAEAIELLRQVEIPNPEKALDRYAFQYSGGMRQRAMIAMALACKPQL 185

Query: 178 LIADEPTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVE 237
           LIADEPTTALDV+ QA+ILDL+  LQ+  GMA+LFITHD+ +V +IAD V VM  G + E
Sbjct: 186 LIADEPTTALDVTTQAEILDLISRLQKAHGMAVLFITHDMGVVAQIADDVLVMHHGVVKE 245

Query: 238 TNACHTLFAAPAHPYTQQLIN--------ADPRGVPVPTAMDAPTLLQAEKLRVWFPIKG 289
                 +F  P  PYT+ LI         A+ R    P    A  +L+ + L + F    
Sbjct: 246 YGTVEQIFHKPQDPYTRMLIGSVLKLEQKAEIRLARPPLDQTAAPILEVKDLSMHF---- 301

Query: 290 GYFRRTQAYIKAVTDMSFTLAKGQSLGLVGESGSGKSTTGMAILKLL---ASQGAIRFAG 346
                    +KA+  +S  L  G++LG+VGESGSGK+T G +I++L    A +   R A 
Sbjct: 302 -------GEMKALDGVSIKLLPGETLGIVGESGSGKTTMGRSIMRLYDPTAGEMLYRRAD 354

Query: 347 Q---DLQALKRREMLPYRSKMQVVFQDPYSALNPRMSVAQVIGEGLRVHSQLNDDEIDHA 403
               DL  ++ +E+   R ++++VFQDP+ +LNPRM+VAQVIGE L V+      E++  
Sbjct: 355 GSVVDLSKIEGKELKAARRELRMVFQDPFGSLNPRMTVAQVIGEPLLVNGIAKGKELEER 414

Query: 404 ICAVMQEVGLDVDTRHRYPNEFSGGQRQRIAIARALVLKPEFILLDEPTSSLDRTVQAQV 463
           +C++M++VGLD   R RYP+ FSGGQRQRI IARA+ L+P  I+ DE TS+LD +V+ QV
Sbjct: 415 VCSLMEQVGLDPSGRERYPHAFSGGQRQRIGIARAITLRPRIIVADEATSALDVSVRFQV 474

Query: 464 LDLLKDLQQKYQLTYLFISHDLAVIRALCHHTIVMKAGEIVEHGETQSLFENPSHPYTQQ 523
           LDLL  LQ +  L Y+FISHD+ VIR +C    VM  G++VE GE + +   P HPYTQ 
Sbjct: 475 LDLLMKLQDELGLAYIFISHDIGVIRYMCDRVGVMYRGKLVEVGEAEKVCNAPDHPYTQA 534

Query: 524 LV 525
           L+
Sbjct: 535 LL 536



 Score =  178 bits (451), Expect = 5e-49
 Identities = 102/261 (39%), Positives = 153/261 (58%), Gaps = 7/261 (2%)

Query: 5   VLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSA 64
           +L++ +LS+ FG         +GVS+ +  GETL +VGESGSGK+    +I+RL    + 
Sbjct: 291 ILEVKDLSMHFG----EMKALDGVSIKLLPGETLGIVGESGSGKTTMGRSIMRLYDPTAG 346

Query: 65  HYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRG 124
             L        VD  +   + L+  R   + M+FQ+P  SLNP   + + + E L ++  
Sbjct: 347 EMLYRRADGSVVDLSKIEGKELKAARR-ELRMVFQDPFGSLNPRMTVAQVIGEPLLVNGI 405

Query: 125 LRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPT 184
            +    E++    + +VG+  P  +   YPH  SGG+RQR+ IA A+   P +++ADE T
Sbjct: 406 AKGKELEERVCSLMEQVGL-DPSGR-ERYPHAFSGGQRQRIGIARAITLRPRIIVADEAT 463

Query: 185 TALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTL 244
           +ALDVSV+ Q+LDLL  LQ ELG+A +FI+HD+ ++R + DRV VM  G+LVE      +
Sbjct: 464 SALDVSVRFQVLDLLMKLQDELGLAYIFISHDIGVIRYMCDRVGVMYRGKLVEVGEAEKV 523

Query: 245 FAAPAHPYTQQLINADPRGVP 265
             AP HPYTQ L++A PR  P
Sbjct: 524 CNAPDHPYTQALLSAIPRPDP 544



 Score =  156 bits (394), Expect = 2e-42
 Identities = 94/269 (34%), Positives = 153/269 (56%), Gaps = 22/269 (8%)

Query: 272 APTLLQAEKLRVWFPIKGGYFRRTQAYIKAVTDMSFTLAKGQSLGLVGESGSGKSTTGMA 331
           A  LL+   L   FP++ G FR       AV D+SF++  G++L +VGESGSGKS T  +
Sbjct: 4   AKPLLEVRNLVTEFPLRTGVFR-------AVNDISFSIEPGKTLCVVGESGSGKSVTARS 56

Query: 332 ILKLLASQGAIRF----------AGQDLQAL--KRREMLPYR-SKMQVVFQDPYSALNPR 378
           IL+++ S G I            +  DL  L  + R +   R + + ++FQ+P S+L+P 
Sbjct: 57  ILQIIDSPGYITSGSIILNKADGSSVDLAKLDPRGRAIRAVRGADIAMIFQEPMSSLSPV 116

Query: 379 MSVAQVIGEGLRVHSQLNDDEIDHAICAVMQEVGLDVDTR--HRYPNEFSGGQRQRIAIA 436
            +V   I E LR+H +++  +       ++++V +    +   RY  ++SGG RQR  IA
Sbjct: 117 HTVGDQITEVLRLHLKMSKAQARAEAIELLRQVEIPNPEKALDRYAFQYSGGMRQRAMIA 176

Query: 437 RALVLKPEFILLDEPTSSLDRTVQAQVLDLLKDLQQKYQLTYLFISHDLAVIRALCHHTI 496
            AL  KP+ ++ DEPT++LD T QA++LDL+  LQ+ + +  LFI+HD+ V+  +    +
Sbjct: 177 MALACKPQLLIADEPTTALDVTTQAEILDLISRLQKAHGMAVLFITHDMGVVAQIADDVL 236

Query: 497 VMKAGEIVEHGETQSLFENPSHPYTQQLV 525
           VM  G + E+G  + +F  P  PYT+ L+
Sbjct: 237 VMHHGVVKEYGTVEQIFHKPQDPYTRMLI 265