Pairwise Alignments

Query, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 611 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  435 bits (1119), Expect = e-126
 Identities = 246/551 (44%), Positives = 336/551 (60%), Gaps = 29/551 (5%)

Query: 3   DWVLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKG 62
           D VL + NL+  F + G  +PV   +S  +  GET+A+VGESGSGKSVT+ +I+RLL + 
Sbjct: 13  DAVLSVRNLTTSFHVDGGWKPVVRDISFDVGPGETVAIVGESGSGKSVTSLSIMRLLDRE 72

Query: 63  SAHYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIH 122
           S+  + G I  G  + L  SE A+R +RG  + MIFQEPM SLNPL  IG Q+ E L  H
Sbjct: 73  SSR-VQGEILLGGRNLLSLSEDAMRRVRGNEVAMIFQEPMTSLNPLFTIGDQISEALLCH 131

Query: 123 RGLRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADE 182
           + +    A  + +  L KV I     + + YPH  SGG RQRVMIAMAL ++P+LLIADE
Sbjct: 132 QPMSKAEARAETVRLLEKVRIPSAASRFDEYPHRFSGGMRQRVMIAMALASKPKLLIADE 191

Query: 183 PTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACH 242
           PTTALDV++Q QILDL+K+LQ+E G ++LFITHD+ +V  IADR  VM  G+ VE  A  
Sbjct: 192 PTTALDVTIQGQILDLIKTLQEEEGTSVLFITHDMGVVAEIADRTVVMYRGEQVEVGATA 251

Query: 243 TLFAAPAHPYTQQLINADP------------RGVPVPTA---------------MDAPTL 275
            +F    HPYT+ L++A P            R   V TA                 A  +
Sbjct: 252 DIFHRGKHPYTRALLSAVPVLGSMKGEERPLRFPIVNTATGETQEPVRPADTVDASAQPV 311

Query: 276 LQAEKLRVWFPIKGGYFRRTQAYIKAVTDMSFTLAKGQSLGLVGESGSGKSTTGMAILKL 335
           L+ E L   F I  G   R    + AV ++SF L  G++L LVGESG GKSTTG AI++L
Sbjct: 312 LKVEGLTKRFDIHSGLLGRLSGRVHAVENVSFDLRAGETLSLVGESGCGKSTTGRAIMRL 371

Query: 336 L-ASQGAIRFAGQDLQALKRREMLPYRSKMQVVFQDPYSALNPRMSVAQVIGEGLRVHSQ 394
           +    G++   G+++  L +  M   R  +Q++FQDP+++LNPRM+V   I E    H  
Sbjct: 372 IEPDAGSVVVNGENILTLDKSGMREMRKTVQMIFQDPFASLNPRMTVGAAIAEPFLEHRM 431

Query: 395 LNDDEIDHAICAVMQEVGLDVDTRHRYPNEFSGGQRQRIAIARALVLKPEFILLDEPTSS 454
            +  E    +  ++ +VGL  D   RYP+EFSGGQRQRI IARAL L+P+ I+ DE  S+
Sbjct: 432 GSAREAKEVVADMLNKVGLSPDMAARYPHEFSGGQRQRICIARALALQPKVIVADESVSA 491

Query: 455 LDRTVQAQVLDLLKDLQQKYQLTYLFISHDLAVIRALCHHTIVMKAGEIVEHGETQSLFE 514
           LD +++AQV++L+ DLQQ   L +LFISHD+AV+  + H   VM  GEIVE G    +F+
Sbjct: 492 LDVSIKAQVINLMLDLQQSLDLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRADVFD 551

Query: 515 NPSHPYTQQLV 525
           NP H YT++L+
Sbjct: 552 NPQHDYTRKLM 562



 Score =  181 bits (460), Expect = 5e-50
 Identities = 111/271 (40%), Positives = 163/271 (60%), Gaps = 21/271 (7%)

Query: 5   VLKIDNLSVGFGI--------AGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAIL 56
           VLK++ L+  F I        +G+   V E VS  +  GETL+LVGESG GKS T  AI+
Sbjct: 311 VLKVEGLTKRFDIHSGLLGRLSGRVHAV-ENVSFDLRAGETLSLVGESGCGKSTTGRAIM 369

Query: 57  RLLPKGSAHYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLV 116
           RL+   +     GS+     + L   +  +R +R   + MIFQ+P  SLNP   +G  + 
Sbjct: 370 RLIEPDA-----GSVVVNGENILTLDKSGMREMRK-TVQMIFQDPFASLNPRMTVGAAIA 423

Query: 117 ETLAIHRGLRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPE 176
           E    HR   A  A++   + L KVG+  P++    YPHE SGG+RQR+ IA AL  +P+
Sbjct: 424 EPFLEHRMGSAREAKEVVADMLNKVGLS-PDMAAR-YPHEFSGGQRQRICIARALALQPK 481

Query: 177 LLIADEPTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLV 236
           +++ADE  +ALDVS++AQ+++L+  LQQ L +A LFI+HD+++V R++ RVAVM  G++V
Sbjct: 482 VIVADESVSALDVSIKAQVINLMLDLQQSLDLAFLFISHDMAVVERVSHRVAVMYLGEIV 541

Query: 237 ETNACHTLFAAPAHPYTQQLINADPRGVPVP 267
           E      +F  P H YT++L+ A    VPVP
Sbjct: 542 EIGPRADVFDNPQHDYTRKLMAA----VPVP 568



 Score =  167 bits (424), Expect = 8e-46
 Identities = 99/273 (36%), Positives = 155/273 (56%), Gaps = 18/273 (6%)

Query: 261 PRGVPVPTAMDAPTLLQAEKLRVWFPIKGGYFRRTQAYIKAVTDMSFTLAKGQSLGLVGE 320
           P+  P+  A DA  +L    L   F + GG+          V D+SF +  G+++ +VGE
Sbjct: 4   PQAAPLG-AEDA--VLSVRNLTTSFHVDGGWK-------PVVRDISFDVGPGETVAIVGE 53

Query: 321 SGSGKSTTGMAILKLLAS-----QGAIRFAGQDLQALKRREMLPYR-SKMQVVFQDPYSA 374
           SGSGKS T ++I++LL       QG I   G++L +L    M   R +++ ++FQ+P ++
Sbjct: 54  SGSGKSVTSLSIMRLLDRESSRVQGEILLGGRNLLSLSEDAMRRVRGNEVAMIFQEPMTS 113

Query: 375 LNPRMSVAQVIGEGLRVHSQLNDDEIDHAICAVMQEVGLDVDTRH--RYPNEFSGGQRQR 432
           LNP  ++   I E L  H  ++  E       ++++V +         YP+ FSGG RQR
Sbjct: 114 LNPLFTIGDQISEALLCHQPMSKAEARAETVRLLEKVRIPSAASRFDEYPHRFSGGMRQR 173

Query: 433 IAIARALVLKPEFILLDEPTSSLDRTVQAQVLDLLKDLQQKYQLTYLFISHDLAVIRALC 492
           + IA AL  KP+ ++ DEPT++LD T+Q Q+LDL+K LQ++   + LFI+HD+ V+  + 
Sbjct: 174 VMIAMALASKPKLLIADEPTTALDVTIQGQILDLIKTLQEEEGTSVLFITHDMGVVAEIA 233

Query: 493 HHTIVMKAGEIVEHGETQSLFENPSHPYTQQLV 525
             T+VM  GE VE G T  +F    HPYT+ L+
Sbjct: 234 DRTVVMYRGEQVEVGATADIFHRGKHPYTRALL 266